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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS00360 and HER17_RS00365 are separated by 74 nucleotides
HER17_RS00365 and HER17_RS00370 overlap by 4 nucleotides
HER17_RS00370 and HER17_RS00375 are separated by 2 nucleotides
HER17_RS00375 and HER17_RS00380 are separated by 340 nucleotides
HER17_RS00360: HER17_RS00360 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 85,426 to 87,753
_RS00360
HER17_RS00365: HER17_RS00365 - UDP-forming cellulose synthase catalytic subunit, at 87,828 to 90,527
_RS00365
HER17_RS00370: HER17_RS00370 - cellulose synthase operon protein YhjQ, at 90,524 to 91,261
_RS00370
HER17_RS00375: HER17_RS00375 - hypothetical protein, at 91,264 to 91,473
_RS00375
HER17_RS00380: HER17_RS00380 - cellulose biosynthesis protein BcsE, at 91,814 to 93,418
_RS00380
Group
Condition
HER17
_RS00360
HER17
_RS00365
HER17
_RS00370
HER17
_RS00375
HER17
_RS00380
control
LB
-0.1
+0.0
-0.2
-0.1
-0.1
carbon source
M9+glycerol
+0.0
-0.0
-0.1
-0.1
-0.1
carbon source
M9+glycerol
-0.1
+0.0
-0.0
-0.1
-0.1
control
LB
-0.0
-0.0
-0.1
-0.0
-0.1
control
LB
+0.1
+0.0
-0.1
-0.1
-0.1
carbon source
M9+glycerol
-0.1
-0.0
-0.0
-0.0
-0.0
carbon source
M9+glycerol
-0.1
-0.0
+0.0
-0.0
-0.0
control
LB
+0.0
+0.0
-0.2
-0.0
+0.1
carbon source
M9+glycerol
+0.0
+0.0
-0.0
-0.1
-0.1
carbon source
M9+glucose
+0.0
-0.0
+0.0
-0.2
+0.1
control
LB
+0.0
-0.1
-0.0
-0.0
+0.0
control
LB
-0.0
+0.0
-0.0
-0.0
+0.0
carbon source
M9+sucrose
-0.1
+0.1
+0.0
-0.0
+0.0
carbon source
M9+polygalacturonate
-0.0
+0.0
-0.1
-0.0
+0.1
carbon source
M9+starch
+0.1
+0.0
+0.1
-0.2
+0.0
carbon source
M9+starch
+0.1
-0.0
+0.0
-0.0
-0.0
carbon source
M9+glucose
-0.1
-0.1
+0.1
+0.0
+0.1
carbon source
M9+polygalacturonate
+0.1
+0.1
+0.0
-0.0
+0.0
carbon source
M9+sucrose
+0.0
+0.0
+0.1
+0.1
+0.0
plant
Tuber-Atlantic
+0.1
+0.1
-0.1
-0.0
+0.2
carbon source
M9+starch
-0.1
+0.1
+0.2
-0.0
+0.1
carbon source
M9+glucose+arginine
+0.0
-0.1
+0.0
+0.1
+0.2
carbon source
M9+sucrose
-0.0
-0.1
+0.2
+0.1
+0.1
carbon source
M9+polygalacturonate
+0.1
+0.0
-0.0
+0.1
+0.1
carbon source
M9+glucose
+0.1
-0.0
+0.1
+0.1
+0.1
plant
Tuber-Atlantic
-0.1
+0.0
+0.4
-0.2
+0.4
carbon source
M9+glucose+arginine
+0.2
+0.0
+0.2
+0.0
+0.1
carbon source
M9+glucose+arginine
+0.3
+0.1
+0.1
+0.1
+0.1
plant
Tuber-Atlantic
+0.2
+0.2
+0.5
+0.1
+0.1
plant
Tuber-Atlantic
-0.1
+0.6
+0.4
+0.3
+0.2
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