Private Fitness
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS00340 and HER17_RS00345 are separated by 41 nucleotides
HER17_RS00345 and HER17_RS00350 are separated by 66 nucleotides
HER17_RS00350 and HER17_RS00355 are separated by 992 nucleotides
HER17_RS00355 and HER17_RS00360 are separated by 6 nucleotides
HER17_RS00340: HER17_RS00340 - hypothetical protein, at 77,676 to 78,653
_RS00340
HER17_RS00345: HER17_RS00345 - ketoacyl-ACP synthase III, at 78,695 to 79,675
_RS00345
HER17_RS00350: HER17_RS00350 - cellulose biosynthesis protein BcsC, at 79,742 to 83,311
_RS00350
HER17_RS00355: HER17_RS00355 - cellulase, at 84,304 to 85,419
_RS00355
HER17_RS00360: HER17_RS00360 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 85,426 to 87,753
_RS00360
Group
Condition
HER17
_RS00340
HER17
_RS00345
HER17
_RS00350
HER17
_RS00355
HER17
_RS00360
carbon source
M9+glucose
-0.3
-0.2
-0.2
+0.0
+0.0
carbon source
M9+polygalacturonate
-0.2
-0.3
-0.1
+0.1
+0.1
carbon source
M9+polygalacturonate
-0.1
-0.1
-0.0
-0.2
-0.0
carbon source
M9+starch
-0.1
-0.1
-0.1
-0.1
-0.1
carbon source
M9+polygalacturonate
-0.1
-0.2
-0.1
-0.1
+0.1
carbon source
M9+starch
-0.2
-0.1
-0.0
-0.1
+0.1
carbon source
M9+sucrose
-0.2
-0.1
-0.1
+0.1
-0.1
carbon source
M9+sucrose
-0.1
-0.0
-0.1
-0.2
+0.0
carbon source
M9+glycerol
-0.0
-0.1
-0.1
-0.1
-0.1
carbon source
M9+glycerol
-0.2
+0.0
-0.1
-0.1
+0.0
carbon source
M9+glycerol
-0.1
+0.0
-0.1
-0.0
-0.1
carbon source
M9+glucose
-0.1
-0.1
-0.2
+0.1
+0.1
carbon source
M9+glycerol
-0.1
-0.1
-0.1
+0.0
-0.0
carbon source
M9+glucose
-0.2
+0.0
-0.0
+0.1
-0.1
carbon source
M9+sucrose
-0.1
+0.0
-0.0
-0.1
-0.0
carbon source
M9+glucose+arginine
+0.1
-0.2
-0.2
-0.3
+0.3
carbon source
M9+glucose+arginine
-0.4
-0.0
-0.1
+0.3
+0.0
control
LB
-0.1
+0.0
-0.1
+0.1
+0.0
plant
Tuber-Atlantic
-0.4
-0.0
-0.0
+0.1
+0.2
control
LB
-0.1
-0.1
-0.0
+0.1
-0.1
carbon source
M9+starch
-0.1
+0.1
-0.0
-0.1
+0.1
plant
Tuber-Atlantic
-0.3
-0.0
-0.0
+0.2
+0.1
control
LB
+0.0
-0.1
-0.0
+0.2
-0.0
carbon source
M9+glucose+arginine
-0.2
+0.0
-0.0
+0.1
+0.2
control
LB
-0.1
+0.1
+0.0
+0.1
-0.0
plant
Tuber-Atlantic
-0.0
+0.2
+0.2
-0.1
-0.1
carbon source
M9+glycerol
-0.1
+0.2
-0.0
+0.2
-0.1
carbon source
M9+glycerol
+0.1
+0.2
-0.0
+0.1
+0.0
plant
Tuber-Atlantic
-0.1
+0.3
+0.2
+0.0
-0.1
control
LB
+0.0
+0.1
-0.0
+0.2
+0.0
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