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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS00320 and HER17_RS00325 are separated by 162 nucleotides
HER17_RS00325 and HER17_RS00330 are separated by 213 nucleotides
HER17_RS00330 and HER17_RS00335 are separated by 329 nucleotides
HER17_RS00335 and HER17_RS00340 overlap by 11 nucleotides
HER17_RS00320: HER17_RS00320 - aldose 1-epimerase family protein, at 71,370 to 72,578
_RS00320
HER17_RS00325: HER17_RS00325 - O-acetylserine/cysteine exporter, at 72,741 to 73,652
_RS00325
HER17_RS00330: HER17_RS00330 - gamma-glutamyltransferase, at 73,866 to 75,644
_RS00330
HER17_RS00335: HER17_RS00335 - thiamine pyrophosphate-dependent enzyme, at 75,974 to 77,686
_RS00335
HER17_RS00340: HER17_RS00340 - hypothetical protein, at 77,676 to 78,653
_RS00340
Group
Condition
HER17
_RS00320
HER17
_RS00325
HER17
_RS00330
HER17
_RS00335
HER17
_RS00340
carbon source
M9+glucose+arginine
-0.2
-0.0
+0.1
-0.1
-0.4
plant
Tuber-Atlantic
-0.1
+0.1
-0.3
-0.2
-0.1
carbon source
M9+glucose+arginine
-0.0
-0.1
-0.3
-0.1
-0.2
carbon source
M9+polygalacturonate
-0.1
-0.1
-0.1
+0.0
-0.2
carbon source
M9+glycerol
-0.3
-0.2
+0.0
-0.1
+0.1
carbon source
M9+starch
-0.0
-0.2
-0.0
-0.2
-0.1
carbon source
M9+sucrose
-0.1
-0.1
-0.1
-0.0
-0.1
carbon source
M9+glucose+arginine
-0.2
-0.1
-0.1
-0.1
+0.1
control
LB
-0.2
-0.1
-0.0
-0.1
-0.0
carbon source
M9+sucrose
+0.1
-0.1
-0.2
-0.0
-0.1
carbon source
M9+starch
+0.1
-0.1
-0.1
-0.1
-0.2
control
LB
-0.1
-0.1
+0.0
-0.1
-0.1
carbon source
M9+glucose
-0.0
+0.0
-0.0
-0.1
-0.2
carbon source
M9+polygalacturonate
+0.0
-0.0
-0.2
-0.1
-0.1
control
LB
-0.1
-0.1
-0.0
-0.0
-0.1
carbon source
M9+glycerol
-0.1
-0.2
+0.0
-0.0
-0.1
carbon source
M9+polygalacturonate
-0.0
-0.1
-0.1
-0.0
-0.1
carbon source
M9+glucose
+0.0
-0.1
+0.1
-0.1
-0.3
control
LB
-0.1
-0.1
+0.1
-0.1
+0.0
plant
Tuber-Atlantic
-0.0
-0.0
+0.2
-0.1
-0.3
carbon source
M9+glycerol
-0.2
-0.1
+0.1
+0.0
-0.1
carbon source
M9+starch
+0.1
+0.0
-0.2
-0.1
-0.1
carbon source
M9+glycerol
+0.0
+0.0
-0.1
+0.0
-0.2
carbon source
M9+sucrose
-0.1
-0.1
+0.1
+0.1
-0.2
carbon source
M9+glycerol
-0.1
+0.0
+0.0
-0.0
-0.1
plant
Tuber-Atlantic
+0.1
+0.1
-0.2
+0.2
-0.4
control
LB
-0.0
-0.2
+0.1
-0.0
+0.0
carbon source
M9+glucose
+0.1
+0.2
-0.2
-0.0
-0.1
control
LB
+0.0
-0.1
+0.1
-0.0
-0.1
plant
Tuber-Atlantic
+0.4
-0.1
+0.0
-0.2
-0.0
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