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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS00230 and HER17_RS00235 are separated by 13 nucleotides
HER17_RS00235 and HER17_RS00240 overlap by 4 nucleotides
HER17_RS00240 and HER17_RS00245 are separated by 87 nucleotides
HER17_RS00245 and HER17_RS00250 are separated by 227 nucleotides
HER17_RS00230: HER17_RS00230 - dipeptide ABC transporter permease DppC, at 52,080 to 52,982
_RS00230
HER17_RS00235: HER17_RS00235 - dipeptide ABC transporter ATP-binding protein, at 52,996 to 53,976
_RS00235
HER17_RS00240: HER17_RS00240 - ABC transporter ATP-binding protein, at 53,973 to 54,983
_RS00240
HER17_RS00245: HER17_RS00245 - hypothetical protein, at 55,071 to 55,550
_RS00245
HER17_RS00250: HER17_RS00250 - hypothetical protein, at 55,778 to 56,116
_RS00250
Group
Condition
HER17
_RS00230
HER17
_RS00235
HER17
_RS00240
HER17
_RS00245
HER17
_RS00250
carbon source
M9+glucose
-0.7
-0.4
-0.5
-0.9
-0.6
carbon source
M9+glucose
-1.0
-0.7
-0.6
-0.2
-0.2
carbon source
M9+glucose+arginine
-0.7
-0.5
-0.5
-0.2
-0.1
carbon source
M9+glucose+arginine
-0.7
-0.3
-0.5
+0.1
-0.5
carbon source
M9+glycerol
-0.3
-0.2
-0.1
-0.8
-0.3
carbon source
M9+glucose+arginine
-0.6
-0.6
-0.7
+0.5
-0.1
carbon source
M9+sucrose
-0.4
-0.0
-0.2
-0.5
+0.1
carbon source
M9+glucose
-0.6
-0.8
-0.6
+0.8
+0.1
carbon source
M9+starch
+0.1
-0.1
-0.2
-0.6
-0.0
plant
Tuber-Atlantic
-0.6
+0.1
-0.1
-0.3
+0.3
carbon source
M9+starch
+0.1
-0.1
-0.0
-0.5
-0.1
plant
Tuber-Atlantic
+0.4
+0.3
-0.6
-0.4
-0.2
plant
Tuber-Atlantic
-0.2
+0.2
-0.1
-0.4
-0.0
carbon source
M9+sucrose
-0.3
-0.1
-0.1
-0.1
+0.1
carbon source
M9+glycerol
-0.0
-0.0
-0.1
-0.1
-0.1
carbon source
M9+glycerol
-0.2
-0.2
-0.1
+0.2
-0.1
carbon source
M9+starch
+0.1
-0.0
-0.2
-0.3
+0.0
carbon source
M9+polygalacturonate
+0.1
-0.0
-0.1
-0.2
-0.0
carbon source
M9+sucrose
-0.2
-0.1
-0.1
+0.0
+0.1
carbon source
M9+glycerol
+0.1
-0.1
-0.1
-0.4
+0.3
control
LB
+0.3
-0.1
+0.1
-0.4
+0.0
carbon source
M9+glycerol
+0.1
-0.1
-0.0
+0.1
-0.1
carbon source
M9+glycerol
-0.3
-0.1
-0.2
+0.6
-0.0
control
LB
+0.1
+0.1
+0.2
-0.3
-0.1
control
LB
+0.2
+0.2
+0.0
-0.2
-0.1
carbon source
M9+polygalacturonate
-0.2
+0.1
-0.2
+0.1
+0.3
control
LB
+0.2
+0.1
-0.0
-0.1
-0.1
carbon source
M9+polygalacturonate
+0.1
-0.1
-0.0
+0.4
+0.0
control
LB
+0.1
+0.2
+0.2
+0.1
+0.0
plant
Tuber-Atlantic
-0.1
-0.1
+0.1
+0.9
+0.2
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HER17_RS00240
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