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Cofit
Protein
Homologs
Fitness for 5 genes in
Pectobacterium carotovorum WPP14
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HER17_RS00005 and HER17_RS00010 are separated by 4 nucleotides
HER17_RS00010 and HER17_RS00015 are separated by 50 nucleotides
HER17_RS00015 and HER17_RS00020 are separated by 18 nucleotides
HER17_RS00020 and HER17_RS00025 are separated by 137 nucleotides
HER17_RS00005: HER17_RS00005 - chromosomal replication initiator protein DnaA, at 1 to 1,398
_RS00005
HER17_RS00010: HER17_RS00010 - DNA polymerase III subunit beta, at 1,403 to 2,503
_RS00010
HER17_RS00015: HER17_RS00015 - DNA replication/repair protein RecF, at 2,554 to 3,639
_RS00015
HER17_RS00020: HER17_RS00020 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 3,658 to 6,075
_RS00020
HER17_RS00025: HER17_RS00025 - MFS transporter, at 6,213 to 7,403
_RS00025
Group
Condition
HER17
_RS00005
HER17
_RS00010
HER17
_RS00015
HER17
_RS00020
HER17
_RS00025
control
LB
N.D.
N.D.
-0.5
N.D.
-0.3
carbon source
M9+glucose+arginine
N.D.
N.D.
-0.5
N.D.
-0.2
carbon source
M9+glucose
N.D.
N.D.
-0.8
N.D.
+0.1
control
LB
N.D.
N.D.
-0.5
N.D.
-0.2
control
LB
N.D.
N.D.
-0.4
N.D.
-0.1
control
LB
N.D.
N.D.
-0.4
N.D.
-0.1
carbon source
M9+glycerol
N.D.
N.D.
-0.3
N.D.
-0.2
carbon source
M9+glycerol
N.D.
N.D.
-0.2
N.D.
-0.2
control
LB
N.D.
N.D.
-0.4
N.D.
+0.0
control
LB
N.D.
N.D.
-0.4
N.D.
-0.0
carbon source
M9+glucose
N.D.
N.D.
-0.3
N.D.
-0.0
carbon source
M9+polygalacturonate
N.D.
N.D.
-0.2
N.D.
-0.2
carbon source
M9+glucose+arginine
N.D.
N.D.
-0.5
N.D.
+0.1
carbon source
M9+starch
N.D.
N.D.
-0.2
N.D.
-0.1
carbon source
M9+polygalacturonate
N.D.
N.D.
-0.2
N.D.
-0.1
carbon source
M9+glycerol
N.D.
N.D.
-0.3
N.D.
-0.0
carbon source
M9+glycerol
N.D.
N.D.
-0.3
N.D.
-0.1
carbon source
M9+starch
N.D.
N.D.
-0.2
N.D.
-0.1
carbon source
M9+glucose+arginine
N.D.
N.D.
-0.2
N.D.
-0.0
carbon source
M9+glycerol
N.D.
N.D.
-0.1
N.D.
-0.1
carbon source
M9+starch
N.D.
N.D.
-0.2
N.D.
-0.0
carbon source
M9+glycerol
N.D.
N.D.
-0.2
N.D.
-0.0
carbon source
M9+polygalacturonate
N.D.
N.D.
-0.2
N.D.
-0.1
carbon source
M9+sucrose
N.D.
N.D.
-0.2
N.D.
+0.0
carbon source
M9+sucrose
N.D.
N.D.
-0.2
N.D.
-0.0
carbon source
M9+sucrose
N.D.
N.D.
-0.1
N.D.
+0.0
plant
Tuber-Atlantic
N.D.
N.D.
-0.1
N.D.
-0.0
carbon source
M9+glucose
N.D.
N.D.
-0.2
N.D.
+0.1
plant
Tuber-Atlantic
N.D.
N.D.
-0.1
N.D.
+0.2
plant
Tuber-Atlantic
N.D.
N.D.
+0.0
N.D.
+0.2
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