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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
HEPCGN_26730 and HEPCGN_26735 overlap by 14 nucleotides
HEPCGN_26735 and gpV overlap by 4 nucleotides
gpV and HEPCGN_26745 are separated by 68 nucleotides
HEPCGN_26745 and HEPCGN_26750 overlap by 8 nucleotides
HEPCGN_26730: HEPCGN_26730 - baseplate assembly protein, at 4,100,152 to 4,101,060
_26730
HEPCGN_26735: HEPCGN_26735 - baseplate assembly protein, at 4,101,047 to 4,101,406
_26735
HEPCGN_26740: gpV - phage baseplate assembly protein V, at 4,101,403 to 4,101,981
gpV
HEPCGN_26745: HEPCGN_26745 - phage virion morphogenesis protein, at 4,102,050 to 4,102,496
_26745
HEPCGN_26750: HEPCGN_26750 - phage tail protein, at 4,102,489 to 4,102,920
_26750
Group
Condition
HEPCGN
_26730
HEPCGN
_26735
HEPCGN
_26740
HEPCGN
_26745
HEPCGN
_26750
gpV
carbon source
Sodium-DL-Lactate
-0.2
-0.5
+0.0
N.D.
-0.8
carbon source
L-Arabinose
-0.3
+0.3
+0.1
N.D.
-1.3
carbon source
L-Arabinose
-0.0
+0.2
-0.6
N.D.
-0.4
phage
Bas19
-0.3
-0.2
-0.6
N.D.
+0.4
phage
Bas38
+0.0
+0.0
+0.2
N.D.
-0.8
phage
K20
+0.1
+0.0
-0.2
N.D.
-0.4
carbon source
D-Glucose
-0.6
+0.4
+0.2
N.D.
-0.5
phage
Bas19
-0.5
-0.0
-0.1
N.D.
+0.1
phage
Bas38
-0.2
-0.1
+0.3
N.D.
-0.5
no phage control
Control_ECOR38
+0.0
+0.2
+0.1
N.D.
-0.7
no phage control
Control_ECOR38
-0.1
+0.2
+0.3
N.D.
-0.5
phage
TP7
+0.7
-0.1
-0.1
N.D.
-0.5
carbon source
Casamino-acids
-0.5
+0.2
-0.0
N.D.
+0.2
phage
Bas51
-0.1
+0.5
+0.3
N.D.
-0.6
phage
RB23
-0.5
+0.5
-0.4
N.D.
+0.6
phage
Bas48
+0.2
+0.5
-0.1
N.D.
-0.3
phage
TP7
-0.3
-0.2
-0.2
N.D.
+1.0
carbon source
Casamino-acids
+0.5
+0.0
-0.0
N.D.
-0.1
phage
Bas39
+0.0
+0.4
+0.0
N.D.
-0.1
phage
RB23
+0.0
+0.0
+0.0
N.D.
+0.3
phage
Bas55
+0.2
-0.1
+0.1
N.D.
+0.3
phage
Bas39
+0.2
+0.3
+0.2
N.D.
-0.1
carbon source
Sodium-DL-Lactate
+0.1
+0.2
+0.0
N.D.
+0.4
phage
K20
-0.4
+0.5
-0.1
N.D.
+0.6
phage
Bas48
-0.1
+0.8
+0.2
N.D.
-0.1
phage
Bas55
+0.7
-0.0
-0.1
N.D.
+0.2
phage
Phi92
+0.2
-0.1
-0.1
N.D.
+1.2
phage
Phi92
+1.0
+0.2
-0.2
N.D.
+0.7
phage
RB68
+0.6
+0.9
-0.1
N.D.
+0.7
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