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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
HEPCGN_26580 and HEPCGN_26585 are separated by 935 nucleotides
HEPCGN_26585 and lsrR are separated by 409 nucleotides
lsrR and lsrC are separated by 248 nucleotides
lsrC and lsrD overlap by 1 nucleotides
HEPCGN_26580: HEPCGN_26580 - fimbria/pilus periplasmic chaperone, at 4,072,249 to 4,072,587
_26580
HEPCGN_26585: HEPCGN_26585 - hypothetical protein, at 4,073,523 to 4,074,374
_26585
HEPCGN_26590: lsrR - transcriptional regulator LsrR, at 4,074,784 to 4,075,737
lsrR
HEPCGN_26595: lsrC - autoinducer 2 ABC transporter permease LsrC, at 4,075,986 to 4,076,834
lsrC
HEPCGN_26600: lsrD - autoinducer 2 ABC transporter permease LsrD, at 4,076,834 to 4,077,826
lsrD
Group
Condition
HEPCGN
_26580
HEPCGN
_26585
HEPCGN
_26590
HEPCGN
_26595
HEPCGN
_26600
lsrR
lsrC
lsrD
phage
TP7
-0.5
-1.0
+0.2
-0.8
+0.1
phage
K20
-0.5
-0.1
+0.2
-0.3
-0.3
carbon source
Sodium-DL-Lactate
+0.1
-0.3
-0.0
-0.2
-0.6
carbon source
D-Glucose
+0.3
-0.6
-0.2
-0.3
-0.0
phage
Bas19
-0.2
-0.4
+0.0
-0.2
-0.1
phage
Bas55
-0.0
-0.7
+0.3
-0.4
+0.0
phage
RB23
+0.5
-0.5
-0.2
-0.3
-0.1
phage
Bas48
+0.4
-0.1
-0.2
-0.2
-0.2
phage
K20
+0.2
-0.2
-0.2
-0.3
+0.1
phage
RB23
+0.2
-0.2
+0.2
+0.2
-0.8
phage
Phi92
+0.2
-0.5
-0.2
+0.3
-0.2
carbon source
Sodium-DL-Lactate
+0.1
-0.1
+0.0
-0.1
-0.2
carbon source
Casamino-acids
-0.4
+0.1
+0.1
-0.2
+0.2
phage
Bas19
+0.2
-0.7
+0.4
-0.0
-0.1
phage
Phi92
+0.2
-0.3
-0.1
+0.5
-0.6
carbon source
Casamino-acids
+0.2
-0.1
+0.0
-0.1
-0.1
phage
Bas39
+0.5
-0.5
-0.3
+0.0
+0.3
phage
TP7
-0.9
+0.2
+0.4
-0.5
+0.8
carbon source
L-Arabinose
+0.4
+0.0
+0.1
-0.3
-0.4
phage
Bas39
-0.1
-0.3
+0.0
+0.4
+0.0
phage
Bas48
+0.3
-0.3
+0.1
-0.0
+0.0
phage
RB68
+0.1
+0.0
+0.2
+0.0
-0.2
no phage control
Control_ECOR38
+0.1
-0.2
-0.2
+0.6
-0.1
phage
Bas38
+0.3
-0.4
-0.0
+0.2
+0.1
no phage control
Control_ECOR38
+0.4
-0.4
-0.1
+0.2
+0.3
phage
Bas38
+0.7
-0.2
-0.0
+0.7
-0.6
carbon source
L-Arabinose
+0.6
+0.3
+0.3
-0.7
+0.1
phage
Bas51
+0.5
-0.0
-0.1
+0.5
+0.6
phage
Bas55
-0.0
+0.5
+0.4
+0.6
+0.0
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