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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
ttcA and uspF are separated by 175 nucleotides
uspF and ompN are separated by 140 nucleotides
ompN and nifJ are separated by 360 nucleotides
nifJ and ydbJ are separated by 273 nucleotides
HEPCGN_26005: ttcA - tRNA 2-thiocytidine(32) synthetase TtcA, at 3,938,292 to 3,939,227
ttcA
HEPCGN_26010: uspF - universal stress protein UspF, at 3,939,403 to 3,939,837
uspF
HEPCGN_26015: ompN - porin OmpN, at 3,939,978 to 3,941,111
ompN
HEPCGN_26025: nifJ - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 3,941,472 to 3,944,996
nifJ
HEPCGN_26030: ydbJ - Uncharacterized protein YdbJ, at 3,945,270 to 3,945,536
ydbJ
Group
Condition
HEPCGN
_26005
HEPCGN
_26010
HEPCGN
_26015
HEPCGN
_26025
HEPCGN
_26030
ttcA
uspF
ompN
nifJ
ydbJ
phage
Bas48
-0.1
-0.5
-0.2
+0.0
-0.2
phage
TP7
+0.3
-0.2
-0.2
-0.1
-0.3
no phage control
Control_ECOR38
-0.1
-0.0
-0.3
-0.2
+0.1
phage
TP7
+0.3
-0.4
-0.1
+0.0
-0.3
phage
Bas19
-0.1
+0.5
-0.2
-0.1
-0.4
phage
Bas51
-0.2
+0.3
-0.1
-0.0
-0.2
phage
Bas38
+0.0
+0.3
-0.1
-0.1
-0.2
phage
Bas19
+0.1
-0.2
-0.5
+0.1
+0.4
carbon source
Sodium-DL-Lactate
+0.1
+0.1
-0.3
-0.1
+0.2
phage
Bas39
-0.2
+0.5
-0.3
-0.0
-0.0
phage
Bas55
+0.1
-0.0
-0.0
+0.1
-0.0
no phage control
Control_ECOR38
-0.1
+0.3
-0.1
-0.1
+0.1
phage
RB68
+0.4
-0.3
-0.0
+0.0
+0.0
phage
RB23
+0.2
+0.3
+0.1
+0.0
-0.4
carbon source
Casamino-acids
+0.1
+0.4
+0.1
+0.1
-0.4
carbon source
Casamino-acids
-0.0
-0.0
-0.1
-0.0
+0.4
phage
K20
-0.2
+0.4
-0.0
+0.1
-0.0
carbon source
D-Glucose
+0.0
+0.1
+0.4
-0.1
-0.1
phage
RB23
+0.2
+0.1
-0.2
+0.0
+0.1
phage
Phi92
+0.6
-0.2
-0.4
+0.2
+0.1
phage
Bas39
-0.1
+0.3
-0.2
+0.0
+0.2
carbon source
L-Arabinose
-0.2
+0.5
+0.0
+0.0
+0.1
phage
Bas55
+0.1
+0.1
+0.1
+0.0
+0.1
phage
Bas38
+0.2
+0.1
-0.1
-0.1
+0.2
phage
K20
+0.3
+0.1
+0.1
+0.0
-0.1
phage
Phi92
+0.6
+0.3
-0.1
-0.0
-0.1
carbon source
L-Arabinose
-0.2
+0.7
+0.1
-0.1
+0.1
phage
Bas48
-0.0
-0.2
+0.1
+0.1
+0.7
carbon source
Sodium-DL-Lactate
-0.1
+0.6
+0.1
+0.0
+0.2
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