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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
acrA and adeB overlap by 1 nucleotides
adeB and tolC are separated by 3 nucleotides
tolC and araJ are separated by 8 nucleotides
araJ and sapF are separated by 47 nucleotides
HEPCGN_25700: acrA - efflux transporter periplasmic adaptor subunit, at 3,876,245 to 3,877,366
acrA
HEPCGN_25705: adeB - hydrophobe/amphiphile efflux-1 family RND transporter, at 3,877,366 to 3,880,473
adeB
HEPCGN_25710: tolC - multidrug transporter, at 3,880,477 to 3,881,850
tolC
HEPCGN_25715: araJ - Bcr/CflA family drug resistance efflux transporter, at 3,881,859 to 3,883,022
araJ
HEPCGN_25720: sapF - peptide ABC transporter ATP-binding protein SapF, at 3,883,070 to 3,883,876
sapF
Group
Condition
HEPCGN
_25700
HEPCGN
_25705
HEPCGN
_25710
HEPCGN
_25715
HEPCGN
_25720
acrA
adeB
tolC
araJ
sapF
phage
K20
-0.1
-0.0
-0.0
-0.1
-2.1
carbon source
Casamino-acids
-0.0
-0.1
-0.2
-0.1
-1.8
no phage control
Control_ECOR38
-0.0
+0.0
+0.3
-0.2
-1.9
carbon source
Casamino-acids
+0.1
-0.0
-0.0
-0.1
-1.5
phage
Bas38
+0.0
+0.0
+0.1
+0.1
-1.8
phage
RB68
-0.2
-0.1
+0.2
-0.2
-1.2
carbon source
Sodium-DL-Lactate
-0.0
+0.1
-0.1
-0.2
-1.1
no phage control
Control_ECOR38
+0.1
+0.0
+0.1
-0.1
-1.4
phage
K20
-0.1
-0.0
+0.1
+0.0
-1.1
carbon source
D-Glucose
+0.2
-0.0
-0.1
-0.2
-0.9
phage
Bas51
+0.2
-0.1
+0.5
-0.2
-1.3
phage
Bas55
-0.0
-0.1
+0.3
-0.1
-0.9
phage
Bas39
+0.2
+0.1
+0.4
+0.2
-1.5
carbon source
Sodium-DL-Lactate
+0.0
+0.1
+0.1
-0.0
-0.6
carbon source
L-Arabinose
-0.0
+0.1
-0.1
+0.2
-0.7
phage
Bas55
-0.1
+0.1
+0.4
+0.3
-1.1
phage
Bas39
+0.1
-0.0
+0.3
+0.0
-0.8
phage
Bas38
+0.2
-0.2
+0.2
+0.0
-0.5
phage
Bas19
-0.3
-0.2
+0.1
-0.2
+0.6
phage
RB23
-0.1
+0.0
+0.0
+0.1
-0.0
phage
Bas19
+0.0
-0.2
+0.2
+0.2
-0.1
carbon source
L-Arabinose
+0.0
-0.0
+0.2
-0.1
+0.0
phage
RB23
+0.0
+0.0
+0.3
+0.1
+0.1
phage
Bas48
-0.2
-0.4
+0.3
+0.4
+0.7
phage
Bas48
-0.2
-0.1
-0.0
+0.2
+1.0
phage
TP7
-0.3
-0.1
+0.2
+0.1
+1.6
phage
TP7
-0.0
-0.1
+0.4
-0.2
+2.3
phage
Phi92
-0.2
-0.0
+0.1
+0.4
+3.2
phage
Phi92
+0.3
-0.2
+0.1
+0.4
+3.1
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