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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
yciE and yciF are separated by 93 nucleotides
yciF and yciG are separated by 85 nucleotides
yciG and trpA are separated by 380 nucleotides
trpA and trpB overlap by 1 nucleotides
HEPCGN_25500: yciE - Protein YciE, at 3,837,237 to 3,837,695
yciE
HEPCGN_25505: yciF - Protein YciF, at 3,837,789 to 3,838,289
yciF
HEPCGN_25510: yciG - Uncharacterized protein YciG, at 3,838,375 to 3,838,554
yciG
HEPCGN_25515: trpA - tryptophan synthase subunit alpha, at 3,838,935 to 3,839,741
trpA
HEPCGN_25520: trpB - tryptophan synthase subunit beta, at 3,839,741 to 3,840,934
trpB
Group
Condition
HEPCGN
_25500
HEPCGN
_25505
HEPCGN
_25510
HEPCGN
_25515
HEPCGN
_25520
yciE
yciF
yciG
trpA
trpB
carbon source
D-Glucose
+0.4
+0.0
N.D.
-5.2
-6.3
carbon source
Sodium-DL-Lactate
-0.4
-0.6
N.D.
-5.0
-4.8
carbon source
Sodium-DL-Lactate
-0.3
+0.4
N.D.
-4.2
-6.3
carbon source
L-Arabinose
-0.4
+0.2
N.D.
-4.0
-2.9
carbon source
L-Arabinose
-0.5
-0.2
N.D.
-3.5
-2.7
carbon source
Casamino-acids
-0.3
-0.1
N.D.
-3.1
-2.1
carbon source
Casamino-acids
-0.0
-0.3
N.D.
-2.7
-2.1
phage
Bas51
-1.2
-1.2
N.D.
+0.1
-0.1
phage
Phi92
-0.6
-1.0
N.D.
-0.2
-0.1
no phage control
Control_ECOR38
-1.5
+0.2
N.D.
+0.1
+0.1
phage
RB23
-0.6
-0.3
N.D.
-0.2
+0.2
no phage control
Control_ECOR38
-0.2
-0.5
N.D.
+0.2
-0.3
phage
Bas38
-0.9
+0.4
N.D.
-0.0
-0.1
phage
Bas55
-0.2
-0.4
N.D.
+0.2
-0.0
phage
RB23
-0.5
-0.2
N.D.
+0.2
-0.0
phage
K20
+0.4
-0.3
N.D.
-0.3
-0.1
phage
Bas48
-0.2
-0.4
N.D.
+0.4
-0.0
phage
RB68
+0.2
-0.1
N.D.
+0.0
-0.3
phage
TP7
+0.4
-0.1
N.D.
-0.4
+0.0
phage
Bas55
-0.0
-0.2
N.D.
+0.2
-0.0
phage
Bas48
+0.1
-0.4
N.D.
+0.3
+0.0
phage
Bas19
+0.3
-0.4
N.D.
+0.3
+0.0
phage
Bas39
-0.3
+0.4
N.D.
+0.1
+0.1
phage
Bas38
-0.2
+0.5
N.D.
+0.1
-0.1
phage
Bas39
+0.1
+0.3
N.D.
+0.1
-0.1
phage
Bas19
+0.8
-0.2
N.D.
+0.2
-0.0
phage
K20
+1.7
-0.5
N.D.
+0.2
-0.0
phage
TP7
+1.1
+0.2
N.D.
+0.6
+0.2
phage
Phi92
+1.2
+0.8
N.D.
+0.2
+0.1
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