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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
HEPCGN_25400 and HEPCGN_25405 overlap by 8 nucleotides
HEPCGN_25405 and HEPCGN_25410 are separated by 15 nucleotides
HEPCGN_25410 and HEPCGN_25415 overlap by 4 nucleotides
HEPCGN_25415 and yjdB are separated by 7 nucleotides
HEPCGN_25400: HEPCGN_25400 - DNA-packaging protein FI, at 3,819,806 to 3,820,189
_25400
HEPCGN_25405: HEPCGN_25405 - phage tail protein, at 3,820,182 to 3,820,535
_25405
HEPCGN_25410: HEPCGN_25410 - phage tail protein, at 3,820,551 to 3,821,084
_25410
HEPCGN_25415: HEPCGN_25415 - phage tail protein, at 3,821,081 to 3,821,476
_25415
HEPCGN_25420: yjdB - phage tail protein, at 3,821,484 to 3,822,230
yjdB
Group
Condition
HEPCGN
_25400
HEPCGN
_25405
HEPCGN
_25410
HEPCGN
_25415
HEPCGN
_25420
yjdB
phage
TP7
-1.0
-0.5
-0.4
+0.3
-0.0
phage
TP7
+0.3
-0.6
-0.8
-0.1
-0.0
phage
Bas39
+0.1
-0.3
-0.5
-0.2
-0.0
phage
Phi92
+0.1
-0.1
-0.3
-0.3
+0.0
no phage control
Control_ECOR38
-0.0
-0.1
-0.4
+0.0
-0.1
carbon source
Casamino-acids
-0.3
-0.1
+0.3
-0.0
-0.3
phage
Bas55
+0.4
-1.0
+0.1
+0.0
+0.0
carbon source
Sodium-DL-Lactate
+0.2
-0.3
-0.1
-0.1
+0.0
phage
Bas38
-0.0
+0.4
-0.5
+0.1
-0.1
carbon source
D-Glucose
-0.2
+0.5
-0.4
-0.1
-0.0
phage
Bas55
+0.3
-0.3
-0.1
+0.2
-0.2
carbon source
L-Arabinose
-0.0
-0.2
-0.1
+0.3
-0.0
phage
Bas51
-0.1
-0.0
+0.1
+0.2
-0.1
phage
Bas38
+0.1
+0.5
-0.3
-0.0
-0.1
phage
Bas39
+0.1
-0.2
+0.0
+0.2
+0.0
phage
K20
-0.6
-0.3
+0.5
+0.5
+0.1
phage
Bas48
+0.4
+0.1
-0.4
+0.2
-0.0
phage
RB23
+0.8
-0.6
+0.1
-0.0
+0.1
carbon source
Casamino-acids
+0.2
+0.2
-0.3
+0.1
+0.1
carbon source
L-Arabinose
+0.1
+0.0
+0.1
+0.1
+0.0
phage
RB68
+0.1
-0.1
+0.0
+0.2
+0.2
phage
Bas48
+0.4
+0.3
-0.0
-0.2
-0.1
no phage control
Control_ECOR38
+0.7
+0.1
-0.1
-0.0
-0.1
phage
Bas19
+0.5
+0.0
+0.0
+0.2
-0.1
phage
K20
+0.2
-0.3
-0.0
+0.6
+0.1
phage
RB23
+0.5
+0.0
-0.1
+0.3
-0.1
carbon source
Sodium-DL-Lactate
+0.2
+0.5
+0.0
+0.2
-0.0
phage
Bas19
+0.5
+0.2
-0.0
+0.3
-0.1
phage
Phi92
+0.1
+0.1
+0.1
+1.3
+0.2
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