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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
oppB and oppC are separated by 14 nucleotides
oppC and oppD are separated by 11 nucleotides
oppD and oppF overlap by 4 nucleotides
oppF and cls are separated by 52 nucleotides
HEPCGN_25100: oppB - oligopeptide ABC transporter permease OppB, at 3,774,943 to 3,775,863
oppB
HEPCGN_25105: oppC - oligopeptide ABC transporter permease OppC, at 3,775,878 to 3,776,786
oppC
HEPCGN_25110: oppD - murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD, at 3,776,798 to 3,777,811
oppD
HEPCGN_25115: oppF - murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF, at 3,777,808 to 3,778,812
oppF
HEPCGN_25120: cls - cardiolipin synthase, at 3,778,865 to 3,779,194
cls
Group
Condition
HEPCGN
_25100
HEPCGN
_25105
HEPCGN
_25110
HEPCGN
_25115
HEPCGN
_25120
oppB
oppC
oppD
oppF
cls
phage
Bas39
-0.5
-0.3
-0.5
-0.8
+0.2
phage
RB23
-0.1
-0.1
-0.2
+0.2
-1.5
phage
Phi92
+0.0
-0.4
+0.2
+0.4
-1.7
no phage control
Control_ECOR38
-0.5
-0.8
-0.4
+0.1
+0.4
phage
Bas51
-0.5
+0.3
-0.5
-0.5
+0.3
phage
Bas19
+0.1
+0.1
+0.0
+0.2
-1.2
phage
Bas19
-0.1
-0.1
-0.2
+0.2
-0.3
phage
Bas38
-0.2
+0.0
-0.2
+0.0
-0.2
phage
K20
+0.0
-0.2
+0.2
+0.3
-0.7
phage
Bas55
-0.0
-0.1
+0.1
-0.0
-0.4
carbon source
L-Arabinose
-0.2
-0.1
-0.0
-0.3
+0.1
phage
RB23
-0.0
-0.2
-0.0
+0.2
-0.3
phage
Bas48
-0.0
+0.6
+0.1
+0.3
-1.2
phage
Phi92
-0.2
-0.4
-0.3
+0.5
+0.2
carbon source
Sodium-DL-Lactate
+0.1
-0.0
+0.2
-0.1
-0.3
carbon source
Sodium-DL-Lactate
+0.0
-0.1
+0.3
-0.1
-0.2
phage
Bas39
-0.2
+0.5
+0.0
-0.1
-0.4
phage
K20
+0.0
+0.1
-0.2
+0.2
-0.1
phage
Bas48
-0.0
+0.1
+0.1
-0.1
-0.1
phage
RB68
+0.0
-0.3
+0.3
+0.1
-0.0
phage
Bas38
-0.1
+0.2
-0.1
+0.1
+0.0
carbon source
D-Glucose
+0.0
+0.1
+0.1
+0.1
+0.0
no phage control
Control_ECOR38
-0.2
+0.5
-0.1
-0.1
+0.3
phage
TP7
+0.3
-0.3
-0.1
+0.4
+0.1
carbon source
Casamino-acids
+0.1
-0.2
+0.1
+0.1
+0.4
phage
Bas55
+0.1
-0.1
+0.2
+0.3
+0.1
phage
TP7
+0.1
-0.8
+0.4
+0.9
+0.1
carbon source
L-Arabinose
+0.1
+0.3
-0.1
-0.0
+0.6
carbon source
Casamino-acids
+0.2
+0.1
+0.1
+0.5
-0.1
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