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Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
treA and dhaM are separated by 319 nucleotides
dhaM and dhaL are separated by 10 nucleotides
dhaL and dhaK are separated by 10 nucleotides
dhaK and dhaR are separated by 227 nucleotides
HEPCGN_24850: treA - alpha,alpha-trehalase, at 3,723,181 to 3,724,878
treA
HEPCGN_24855: dhaM - dihydroxyacetone kinase phosphoryl donor subunit DhaM, at 3,725,198 to 3,726,616
dhaM
HEPCGN_24860: dhaL - dihydroxyacetone kinase subunit DhaL, at 3,726,627 to 3,727,259
dhaL
HEPCGN_24865: dhaK - dihydroxyacetone kinase subunit DhaK, at 3,727,270 to 3,728,340
dhaK
HEPCGN_24870: dhaR - dihydroxyacetone kinase operon transcriptional regulator DhaR, at 3,728,568 to 3,730,487
dhaR
Group
Condition
HEPCGN
_24850
HEPCGN
_24855
HEPCGN
_24860
HEPCGN
_24865
HEPCGN
_24870
treA
dhaM
dhaL
dhaK
dhaR
phage
Phi92
+0.3
-0.3
-1.3
+0.4
-0.8
phage
Phi92
+0.2
-0.7
-0.5
+0.2
-0.7
phage
Bas48
+0.0
-0.2
-0.8
-0.5
+0.2
carbon source
Sodium-DL-Lactate
+0.1
-0.1
-0.1
-0.1
-0.0
phage
Bas51
-0.0
+0.1
-0.1
-0.1
-0.0
phage
RB68
-0.0
-0.1
-0.2
+0.1
+0.1
carbon source
Sodium-DL-Lactate
+0.1
-0.1
+0.4
-0.3
-0.3
phage
Bas39
-0.3
+0.1
-0.0
-0.0
+0.0
phage
Bas38
-0.1
+0.1
-0.3
+0.1
-0.0
phage
Bas55
+0.1
-0.1
-0.1
-0.0
+0.1
phage
Bas19
-0.3
+0.0
+0.4
-0.3
+0.2
no phage control
Control_ECOR38
+0.1
-0.1
-0.0
+0.1
+0.0
phage
RB23
+0.0
+0.1
-0.4
+0.2
+0.1
phage
Bas38
-0.1
-0.0
+0.5
-0.2
-0.0
phage
K20
-0.1
-0.2
+0.6
-0.1
-0.0
phage
Bas39
-0.1
+0.2
+0.0
+0.1
+0.1
phage
Bas55
+0.0
+0.0
+0.3
+0.0
-0.1
carbon source
D-Glucose
-0.0
-0.1
+0.6
-0.0
-0.1
carbon source
Casamino-acids
+0.1
-0.0
+0.0
+0.1
+0.1
no phage control
Control_ECOR38
+0.2
+0.2
+0.2
-0.2
+0.0
carbon source
L-Arabinose
-0.0
-0.2
+0.7
-0.2
+0.1
phage
K20
+0.3
-0.3
+0.5
-0.1
+0.1
phage
RB23
+0.1
-0.0
+0.2
+0.4
-0.1
phage
Bas19
+0.1
-0.1
+0.5
-0.1
+0.2
carbon source
L-Arabinose
+0.2
+0.1
+0.1
+0.3
+0.1
phage
Bas48
-0.0
-0.3
+1.0
+0.3
+0.0
phage
TP7
+0.4
+0.1
+0.3
+0.3
-0.0
carbon source
Casamino-acids
+0.1
+0.2
+0.3
+0.3
+0.2
phage
TP7
+0.6
-0.1
+1.0
+0.4
+0.2
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