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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
ldcA and emtA are separated by 99 nucleotides
emtA and ycgR are separated by 1 nucleotides
ycgR and ymgE are separated by 200 nucleotides
ymgE and fepA are separated by 49 nucleotides
HEPCGN_24800: ldcA - muramoyltetrapeptide carboxypeptidase, at 3,713,559 to 3,714,473
ldcA
HEPCGN_24805: emtA - membrane-bound lytic murein transglycosylase EmtA, at 3,714,573 to 3,715,184
emtA
HEPCGN_24810: ycgR - Flagellar brake protein YcgR, at 3,715,186 to 3,715,920
ycgR
HEPCGN_24815: ymgE - UPF0410 protein YmgE, at 3,716,121 to 3,716,375
ymgE
HEPCGN_24820: fepA - TonB-dependent receptor, at 3,716,425 to 3,718,395
fepA
Group
Condition
HEPCGN
_24800
HEPCGN
_24805
HEPCGN
_24810
HEPCGN
_24815
HEPCGN
_24820
ldcA
emtA
ycgR
ymgE
fepA
carbon source
L-Arabinose
-5.5
+0.2
-0.4
+0.2
+0.1
carbon source
D-Glucose
-3.0
+0.0
-0.0
-0.2
-0.0
carbon source
Sodium-DL-Lactate
-2.7
+0.1
+0.1
-0.3
-0.1
phage
Bas38
-2.8
+0.3
+0.2
-0.2
-0.0
phage
Bas48
-2.0
-0.0
-0.3
+0.1
-0.0
carbon source
Sodium-DL-Lactate
-2.3
-0.0
-0.1
+0.1
+0.1
carbon source
L-Arabinose
-1.6
+0.2
-0.0
-0.3
+0.1
carbon source
Casamino-acids
-1.7
+0.2
+0.2
-0.2
-0.1
carbon source
Casamino-acids
-1.1
+0.1
-0.1
+0.1
-0.0
no phage control
Control_ECOR38
-1.0
-0.2
+0.2
+0.0
+0.0
phage
Bas39
-1.2
+0.2
+0.3
-0.1
+0.1
phage
Bas51
-1.3
+0.2
+0.3
+0.2
+0.1
phage
TP7
-0.6
+0.3
+0.1
-0.2
-0.1
phage
K20
-0.4
+0.1
-0.4
+0.2
+0.2
phage
Bas38
-0.0
-0.2
-0.1
-0.0
+0.0
phage
RB68
-0.4
+0.2
+0.3
+0.3
+0.1
phage
Bas19
+0.3
+0.1
-0.2
+0.3
-0.1
phage
Bas48
+0.6
+0.2
-0.6
+0.4
+0.1
phage
RB23
+0.1
+0.6
+0.1
-0.2
+0.1
phage
Phi92
+0.4
+0.3
-0.5
+0.4
+0.1
no phage control
Control_ECOR38
+0.5
+0.1
+0.0
+0.1
+0.1
phage
K20
+0.6
+0.0
-0.1
+0.4
+0.1
phage
RB23
+0.4
+0.5
+0.1
+0.0
+0.1
phage
TP7
+0.3
+0.5
+0.1
+0.4
+0.0
phage
Bas55
+1.0
+0.2
+0.2
-0.2
+0.2
phage
Bas39
+0.9
+0.2
+0.3
-0.0
+0.2
phage
Phi92
+0.7
-0.1
-0.2
+1.1
+0.1
phage
Bas55
+1.9
-0.1
+0.3
-0.2
-0.0
phage
Bas19
+1.3
+0.5
-0.1
+0.3
-0.1
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