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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
HEPCGN_24620 and tnp-IS629 overlap by 1 nucleotides
tnp-IS629 and pdeG are separated by 404 nucleotides
pdeG and ymgF are separated by 131 nucleotides
ymgF and aidA are separated by 399 nucleotides
HEPCGN_24620: HEPCGN_24620 - HTH-21 domain-containing protein, at 3,680,182 to 3,680,661
_24620
HEPCGN_24625: tnp-IS629 - IS3 family IS629 transposase, at 3,680,661 to 3,680,987
tnp-IS629
HEPCGN_24630: pdeG - putative cyclic di-GMP phosphodiesterase PdeG, at 3,681,392 to 3,682,915
pdeG
HEPCGN_24635: ymgF - Inner membrane protein YmgF, at 3,683,047 to 3,683,265
ymgF
HEPCGN_24640: aidA - Autotransporter adhesin AidA, at 3,683,665 to 3,686,313
aidA
Group
Condition
HEPCGN
_24620
HEPCGN
_24625
HEPCGN
_24630
HEPCGN
_24635
HEPCGN
_24640
tnp-IS629
pdeG
ymgF
aidA
phage
Phi92
N.D.
N.D.
+0.0
-1.2
-0.3
phage
RB23
N.D.
N.D.
+0.2
-0.5
-0.2
phage
Bas39
N.D.
N.D.
+0.1
-0.6
+0.1
phage
TP7
N.D.
N.D.
-0.4
+0.2
-0.1
phage
Bas51
N.D.
N.D.
+0.1
-0.4
+0.0
phage
Bas38
N.D.
N.D.
-0.1
-0.3
+0.1
phage
Bas39
N.D.
N.D.
+0.1
-0.3
+0.0
phage
TP7
N.D.
N.D.
-0.0
+0.1
-0.2
carbon source
D-Glucose
N.D.
N.D.
-0.0
+0.0
-0.1
no phage control
Control_ECOR38
N.D.
N.D.
+0.1
-0.2
+0.0
no phage control
Control_ECOR38
N.D.
N.D.
+0.2
-0.4
+0.2
phage
Bas38
N.D.
N.D.
+0.1
+0.0
-0.0
phage
Bas55
N.D.
N.D.
-0.1
+0.3
-0.0
carbon source
Casamino-acids
N.D.
N.D.
-0.0
+0.2
-0.0
carbon source
L-Arabinose
N.D.
N.D.
-0.0
+0.2
+0.1
phage
Bas48
N.D.
N.D.
+0.1
-0.2
+0.3
phage
RB23
N.D.
N.D.
-0.0
+0.3
-0.0
phage
K20
N.D.
N.D.
-0.0
+0.4
-0.1
carbon source
Sodium-DL-Lactate
N.D.
N.D.
+0.0
-0.0
+0.3
phage
Bas19
N.D.
N.D.
-0.2
+0.4
+0.0
phage
Bas19
N.D.
N.D.
-0.1
+0.3
+0.1
phage
RB68
N.D.
N.D.
-0.1
+0.4
+0.1
phage
K20
N.D.
N.D.
-0.1
+0.4
+0.0
phage
Phi92
N.D.
N.D.
+0.0
+0.4
+0.0
carbon source
Casamino-acids
N.D.
N.D.
-0.0
+0.4
+0.1
carbon source
Sodium-DL-Lactate
N.D.
N.D.
+0.2
+0.4
-0.1
phage
Bas48
N.D.
N.D.
+0.1
+0.7
+0.0
phage
Bas55
N.D.
N.D.
+0.3
+0.6
-0.0
carbon source
L-Arabinose
N.D.
N.D.
+0.1
+0.6
+0.2
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