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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
torD and cbpM are separated by 151 nucleotides
cbpM and cbpA overlap by 1 nucleotides
cbpA and HEPCGN_23470 are separated by 259 nucleotides
HEPCGN_23470 and agp are separated by 292 nucleotides
HEPCGN_23450: torD - molecular chaperone TorD, at 3,487,483 to 3,488,082
torD
HEPCGN_23460: cbpM - chaperone modulator CbpM, at 3,488,234 to 3,488,539
cbpM
HEPCGN_23465: cbpA - curved DNA-binding protein, at 3,488,539 to 3,489,459
cbpA
HEPCGN_23470: HEPCGN_23470 - YccE family protein, at 3,489,719 to 3,490,975
_23470
HEPCGN_23475: agp - bifunctional glucose-1-phosphatase/inositol phosphatase, at 3,491,268 to 3,492,509
agp
Group
Condition
HEPCGN
_23450
HEPCGN
_23460
HEPCGN
_23465
HEPCGN
_23470
HEPCGN
_23475
torD
cbpM
cbpA
agp
phage
TP7
+0.7
N.D.
-0.8
-2.3
-0.1
phage
TP7
+0.0
N.D.
-0.5
-1.4
+0.0
carbon source
Casamino-acids
-0.2
N.D.
+0.0
-1.4
-0.1
phage
Bas38
+0.3
N.D.
-0.4
-0.8
+0.1
carbon source
Sodium-DL-Lactate
-0.0
N.D.
-0.3
-0.4
-0.1
carbon source
Casamino-acids
+0.3
N.D.
+0.1
-1.0
+0.0
carbon source
D-Glucose
-0.2
N.D.
+0.1
-0.6
+0.1
carbon source
L-Arabinose
+0.1
N.D.
+0.5
-1.0
-0.0
phage
Bas39
-0.2
N.D.
-0.2
+0.1
-0.1
no phage control
Control_ECOR38
+0.1
N.D.
-0.2
-0.1
-0.1
phage
K20
+0.1
N.D.
-0.0
-0.5
+0.2
phage
Bas48
+0.3
N.D.
-0.0
-0.4
+0.1
phage
Bas39
-0.1
N.D.
-0.2
+0.3
+0.2
phage
Bas51
-0.1
N.D.
-0.2
+0.7
-0.2
phage
Bas38
+0.2
N.D.
-0.0
+0.3
-0.0
phage
Phi92
-0.1
N.D.
+0.6
-0.2
+0.1
phage
Bas19
+0.4
N.D.
-0.1
+0.2
-0.0
phage
RB68
+0.5
N.D.
+0.2
-0.4
+0.2
carbon source
Sodium-DL-Lactate
-0.1
N.D.
+0.2
+0.5
+0.0
no phage control
Control_ECOR38
-0.2
N.D.
+0.1
+0.6
+0.1
phage
Bas19
+0.1
N.D.
-0.2
+0.7
+0.1
phage
Bas48
+0.1
N.D.
-0.2
+0.6
+0.3
phage
RB23
+0.5
N.D.
+0.1
+0.1
+0.2
phage
RB23
+0.5
N.D.
-0.1
+0.5
+0.0
phage
Bas55
+0.3
N.D.
+0.2
+0.5
+0.2
phage
Phi92
-0.1
N.D.
+0.6
+0.9
-0.1
carbon source
L-Arabinose
+0.2
N.D.
+0.2
+0.9
+0.1
phage
Bas55
+0.2
N.D.
+0.0
+1.0
+0.2
phage
K20
+0.1
N.D.
+0.2
+1.1
+0.1
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