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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
rcsD and ompC are separated by 738 nucleotides
ompC and apbE are separated by 111 nucleotides
apbE and ada are separated by 73 nucleotides
ada and alkB overlap by 1 nucleotides
HEPCGN_22455: rcsD - phosphotransferase RcsD, at 3,262,309 to 3,264,981
rcsD
HEPCGN_22465: ompC - porin OmpC, at 3,265,720 to 3,266,814
ompC
HEPCGN_22470: apbE - FAD:protein FMN transferase ApbE, at 3,266,926 to 3,267,981
apbE
HEPCGN_22475: ada - bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada, at 3,268,055 to 3,269,119
ada
HEPCGN_22480: alkB - DNA oxidative demethylase AlkB, at 3,269,119 to 3,269,769
alkB
Group
Condition
HEPCGN
_22455
HEPCGN
_22465
HEPCGN
_22470
HEPCGN
_22475
HEPCGN
_22480
rcsD
ompC
apbE
ada
alkB
phage
RB23
+0.2
-0.8
-3.1
+0.3
+0.3
phage
TP7
+0.5
-0.9
-3.2
+0.3
+0.6
phage
TP7
+0.8
-0.8
-2.9
-0.1
+0.4
phage
Bas19
+0.1
-0.1
-2.2
-0.1
+0.0
phage
RB23
+0.0
-0.5
-0.9
-0.1
+0.1
phage
Bas19
+0.2
-0.4
-1.1
-0.4
+0.3
phage
Bas48
+0.1
+0.3
-1.5
-0.0
+0.1
phage
Bas39
-0.1
-0.1
-0.5
-0.2
+0.1
phage
K20
-0.2
-0.2
-1.1
+0.3
+0.4
phage
Bas55
-0.0
-0.1
-0.8
-0.1
+0.2
phage
RB68
-0.1
-0.0
-0.4
-0.1
-0.1
carbon source
Casamino-acids
-0.1
-0.0
-0.6
+0.1
+0.0
carbon source
Casamino-acids
-0.2
+0.2
-0.5
-0.2
+0.1
phage
Bas51
+0.0
-0.2
-0.0
-0.1
-0.2
phage
Bas38
-0.1
-0.1
-0.2
+0.0
-0.1
no phage control
Control_ECOR38
+0.1
+0.0
-0.2
-0.1
-0.2
phage
Bas55
+0.0
-0.2
-0.5
+0.1
+0.2
phage
Bas38
-0.1
+0.1
-0.5
+0.0
+0.2
carbon source
Sodium-DL-Lactate
-0.4
-0.1
+0.1
+0.0
+0.2
carbon source
Sodium-DL-Lactate
-0.3
+0.1
-0.3
+0.1
+0.1
phage
Bas39
-0.1
+0.0
+0.0
-0.1
-0.0
no phage control
Control_ECOR38
-0.1
-0.1
+0.0
-0.1
+0.1
carbon source
L-Arabinose
-0.1
+0.0
+0.0
+0.0
+0.0
carbon source
D-Glucose
+0.1
+0.1
-0.3
+0.2
+0.0
phage
K20
-0.0
-0.0
-0.4
+0.1
+0.5
carbon source
L-Arabinose
-0.1
+0.3
+0.2
+0.2
+0.3
phage
Bas48
+0.2
+0.7
-0.5
+0.5
+0.0
phage
Phi92
-0.1
+1.0
+0.6
-0.1
+0.5
phage
Phi92
-0.2
+0.9
+0.9
+0.3
+0.3
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