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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
yfaA and yfaT overlap by 4 nucleotides
yfaT and HEPCGN_22390 are separated by 143 nucleotides
HEPCGN_22390 and yfaS are separated by 150 nucleotides
yfaS and yfaQ are separated by 0 nucleotides
HEPCGN_22380: yfaA - DUF2138 domain-containing protein, at 3,241,939 to 3,243,627
yfaA
HEPCGN_22385: yfaT - DUF1175 domain-containing protein, at 3,243,624 to 3,244,247
yfaT
HEPCGN_22390: HEPCGN_22390 - Large extracellular alpha-helical protein, at 3,244,391 to 3,244,756
_22390
HEPCGN_22395: yfaS - Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family, at 3,244,907 to 3,248,785
yfaS
HEPCGN_22400: yfaQ - Uncharacterized protein YfaQ, at 3,248,786 to 3,250,435
yfaQ
Group
Condition
HEPCGN
_22380
HEPCGN
_22385
HEPCGN
_22390
HEPCGN
_22395
HEPCGN
_22400
yfaA
yfaT
yfaS
yfaQ
phage
Bas48
-0.1
-0.1
-0.0
-0.2
-0.1
phage
Bas39
-0.3
-0.0
-0.2
-0.1
+0.0
carbon source
Sodium-DL-Lactate
-0.0
+0.0
-0.4
-0.1
+0.1
carbon source
L-Arabinose
+0.1
-0.3
+0.1
-0.2
+0.0
no phage control
Control_ECOR38
-0.1
-0.0
-0.1
-0.0
-0.0
carbon source
D-Glucose
-0.0
+0.2
-0.3
-0.1
+0.1
phage
RB23
-0.0
-0.2
-0.1
+0.0
+0.0
phage
Bas48
-0.1
+0.0
+0.1
-0.1
-0.0
phage
Bas51
+0.0
-0.0
-0.1
-0.1
+0.0
phage
Bas38
-0.2
+0.0
-0.0
+0.1
+0.0
no phage control
Control_ECOR38
+0.1
+0.0
-0.1
-0.1
+0.0
phage
RB23
-0.0
+0.0
+0.0
-0.1
+0.0
phage
TP7
-0.1
+0.0
+0.0
-0.0
+0.1
phage
K20
+0.0
-0.1
+0.2
-0.0
-0.1
carbon source
Casamino-acids
+0.1
+0.1
-0.1
-0.0
+0.0
phage
Bas55
+0.1
+0.2
-0.1
-0.0
-0.0
phage
Bas38
+0.0
+0.1
-0.1
-0.0
+0.1
phage
Bas39
-0.0
+0.0
-0.0
-0.0
+0.1
carbon source
Sodium-DL-Lactate
+0.1
-0.5
+0.4
-0.1
+0.1
phage
Phi92
+0.1
+0.4
-0.1
-0.1
-0.1
phage
K20
-0.1
+0.1
+0.3
-0.1
-0.1
carbon source
L-Arabinose
+0.0
+0.0
+0.3
-0.1
+0.0
phage
Bas19
+0.1
-0.0
+0.2
+0.1
-0.1
carbon source
Casamino-acids
+0.0
+0.1
+0.1
-0.1
+0.2
phage
Phi92
+0.0
-0.0
+0.4
+0.1
-0.0
phage
RB68
+0.1
-0.1
+0.3
+0.1
+0.0
phage
Bas55
+0.2
+0.0
+0.2
-0.0
+0.1
phage
Bas19
+0.0
+0.4
+0.3
+0.0
+0.0
phage
TP7
+0.1
+0.6
+0.1
-0.0
+0.0
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