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Protein
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Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
arnB and ais are separated by 289 nucleotides
ais and nudI are separated by 38 nucleotides
nudI and yfaZ are separated by 277 nucleotides
yfaZ and yfaY are separated by 99 nucleotides
HEPCGN_22210: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 3,200,885 to 3,202,042
arnB
HEPCGN_22215: ais - Lipopolysaccharide core heptose(II)-phosphate phosphatase, at 3,202,332 to 3,202,934
ais
HEPCGN_22220: nudI - nucleoside triphosphatase NudI, at 3,202,973 to 3,203,398
nudI
HEPCGN_22225: yfaZ - Outer membrane protein YfaZ, at 3,203,676 to 3,204,218
yfaZ
HEPCGN_22230: yfaY - nicotinamide mononucleotide deamidase-related protein YfaY, at 3,204,318 to 3,205,520
yfaY
Group
Condition
HEPCGN
_22210
HEPCGN
_22215
HEPCGN
_22220
HEPCGN
_22225
HEPCGN
_22230
arnB
ais
nudI
yfaZ
yfaY
phage
Bas38
+0.0
-0.1
-0.4
-0.2
-0.0
no phage control
Control_ECOR38
+0.2
-0.2
-0.1
-0.3
-0.1
no phage control
Control_ECOR38
-0.1
+0.1
-0.5
-0.1
+0.3
phage
TP7
+0.4
-0.1
+0.4
-1.0
-0.0
phage
Bas51
+0.1
-0.1
-0.2
-0.2
+0.1
phage
Bas38
+0.1
-0.0
-0.3
-0.0
-0.0
carbon source
L-Arabinose
-0.0
-0.1
+0.1
-0.2
+0.1
phage
Phi92
+0.4
-0.1
-0.1
-0.2
-0.1
carbon source
Sodium-DL-Lactate
-0.2
-0.3
+0.2
+0.2
+0.1
phage
Bas39
+0.2
-0.2
+0.0
+0.1
+0.0
phage
Bas48
+0.1
+0.0
+0.4
-0.4
+0.1
phage
RB68
-0.1
+0.0
+0.2
-0.3
+0.4
carbon source
D-Glucose
-0.2
-0.2
+0.5
+0.1
+0.1
carbon source
Casamino-acids
-0.1
-0.3
+0.3
+0.5
-0.0
phage
Bas55
-0.0
-0.1
+0.4
+0.2
-0.0
phage
K20
+0.3
-0.2
+0.1
-0.1
+0.2
carbon source
L-Arabinose
+0.1
+0.1
+0.3
-0.1
+0.1
carbon source
Casamino-acids
-0.1
-0.2
+0.3
+0.5
+0.1
phage
Bas19
+0.0
+0.0
+0.3
-0.2
+0.4
phage
Bas39
+0.1
+0.0
+0.4
-0.0
+0.1
phage
K20
-0.0
+0.1
+0.5
+0.0
-0.0
phage
RB23
+0.7
+0.2
-0.1
+0.0
-0.1
phage
Bas55
+0.3
+0.1
+0.5
-0.1
-0.1
phage
RB23
+0.7
+0.2
-0.4
+0.1
+0.1
phage
Bas48
+0.1
+0.4
+0.5
-0.2
+0.1
carbon source
Sodium-DL-Lactate
-0.3
+0.3
+0.7
+0.3
-0.0
phage
Bas19
+0.3
+0.1
+0.7
-0.1
+0.0
phage
TP7
+0.5
+0.3
+0.6
-0.1
-0.2
phage
Phi92
+1.3
+0.2
+0.3
-0.2
-0.1
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