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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
arnA and arnC overlap by 1 nucleotides
arnC and arnB are separated by 3 nucleotides
arnB and ais are separated by 289 nucleotides
ais and nudI are separated by 38 nucleotides
HEPCGN_22200: arnA - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 3,197,931 to 3,199,913
arnA
HEPCGN_22205: arnC - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 3,199,913 to 3,200,881
arnC
HEPCGN_22210: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 3,200,885 to 3,202,042
arnB
HEPCGN_22215: ais - Lipopolysaccharide core heptose(II)-phosphate phosphatase, at 3,202,332 to 3,202,934
ais
HEPCGN_22220: nudI - nucleoside triphosphatase NudI, at 3,202,973 to 3,203,398
nudI
Group
Condition
HEPCGN
_22200
HEPCGN
_22205
HEPCGN
_22210
HEPCGN
_22215
HEPCGN
_22220
arnA
arnC
arnB
ais
nudI
phage
TP15
-0.2
-0.3
-0.0
-0.4
-0.1
phage
TP12
-0.1
-0.3
+0.1
-0.4
-0.3
phage
Bas18
+0.1
-0.5
-0.2
-0.4
-0.0
phage
Bas05
+0.3
-0.0
-0.1
-0.3
-0.8
no phage control
Control_ECOR38
+0.0
-0.2
+0.1
-0.1
-0.6
phage
RB49
+0.1
-0.4
+0.4
-0.2
-0.6
phage
Bas07
-0.1
+0.1
+0.2
-0.3
-0.6
phage
JK42
-0.1
+0.0
+0.1
-0.4
-0.3
phage
TP2
+0.1
-0.2
+0.2
-0.2
-0.5
carbon source
Sodium-DL-Lactate
-0.1
-0.2
-0.2
-0.3
+0.2
no phage control
Control_ECOR38
-0.1
+0.1
-0.1
+0.1
-0.5
phage
CEV1
+0.1
-0.3
+0.1
-0.2
-0.2
phage
TP15
+0.1
-0.3
+0.2
-0.2
+0.1
phage
K20
-0.0
-0.3
+0.3
-0.2
+0.1
phage
Bas48
-0.1
-0.4
+0.1
+0.0
+0.4
carbon source
D-Glucose
+0.1
-0.0
-0.2
-0.2
+0.5
phage
K25
-0.1
-0.2
+0.0
-0.1
+0.7
phage
Bas39
-0.2
-0.2
+0.1
+0.0
+0.5
phage
K20
+0.2
-0.3
-0.0
+0.1
+0.5
phage
Bas55
-0.0
-0.2
+0.3
+0.1
+0.5
carbon source
Sodium-DL-Lactate
+0.0
-0.1
-0.3
+0.3
+0.7
phage
Bas21
+0.3
-0.1
+0.1
-0.1
+0.7
phage
Bas48
-0.0
-0.0
+0.1
+0.4
+0.5
phage
Bas19
+0.2
-0.1
+0.3
+0.1
+0.7
phage
RB23
+0.5
+0.2
+0.7
+0.2
-0.4
phage
Phi92
+0.6
+0.7
+0.4
-0.1
-0.1
phage
RB23
+0.6
+0.4
+0.7
+0.2
-0.1
phage
TP7
+0.6
+0.5
+0.4
-0.0
+0.4
phage
TP7
+0.6
+0.3
+0.5
+0.3
+0.6
phage
Phi92
+0.8
+0.3
+1.3
+0.2
+0.3
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