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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
smrB and prmB are separated by 165 nucleotides
prmB and aroC are separated by 34 nucleotides
aroC and mepA are separated by 2 nucleotides
mepA and yfcA overlap by 1 nucleotides
HEPCGN_21810: smrB - endonuclease SmrB, at 3,118,311 to 3,118,862
smrB
HEPCGN_21815: prmB - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 3,119,028 to 3,119,960
prmB
HEPCGN_21820: aroC - chorismate synthase, at 3,119,995 to 3,121,080
aroC
HEPCGN_21825: mepA - penicillin-insensitive murein endopeptidase, at 3,121,083 to 3,121,907
mepA
HEPCGN_21830: yfcA - putative membrane transporter protein YfcA, at 3,121,907 to 3,122,716
yfcA
Group
Condition
HEPCGN
_21810
HEPCGN
_21815
HEPCGN
_21820
HEPCGN
_21825
HEPCGN
_21830
smrB
prmB
aroC
mepA
yfcA
carbon source
L-Arabinose
-0.1
-0.8
-7.7
-0.1
+0.1
carbon source
Sodium-DL-Lactate
-0.0
-0.1
-8.0
-0.2
+0.1
carbon source
Sodium-DL-Lactate
-0.2
-0.0
-7.7
-0.1
+0.1
carbon source
D-Glucose
-0.1
-0.5
-5.7
-0.2
-0.1
carbon source
L-Arabinose
+0.3
-0.5
-5.4
-0.1
-0.2
phage
TP7
-0.5
-3.3
-1.4
-0.1
-0.3
phage
Bas19
-0.1
-0.8
-1.5
-0.2
-0.4
phage
RB23
+0.1
-1.3
-1.0
-0.4
-0.2
phage
TP7
+0.3
-2.5
-0.4
-0.1
+0.1
phage
Bas48
+0.4
-1.1
-1.2
+0.0
-0.1
phage
RB23
+0.0
-0.8
-0.7
-0.3
-0.1
carbon source
Casamino-acids
+0.2
+0.0
-2.0
-0.1
+0.1
phage
Bas19
+0.1
-0.9
-0.2
-0.2
-0.1
phage
Bas55
+0.2
-0.4
-0.9
+0.2
-0.2
phage
K20
-0.0
-0.0
-0.5
-0.1
-0.3
carbon source
Casamino-acids
+0.2
-0.2
-0.9
-0.1
+0.1
phage
Bas48
+0.1
-1.0
+0.0
+0.3
-0.2
phage
Bas55
-0.2
-0.3
-0.4
+0.0
+0.2
phage
Bas39
+0.1
+0.0
-0.2
-0.1
-0.4
no phage control
Control_ECOR38
+0.0
-0.2
-0.3
+0.1
-0.0
phage
K20
+0.2
-0.1
+0.2
-0.3
-0.1
phage
Bas51
+0.2
-0.0
+0.1
+0.1
-0.4
phage
Bas38
-0.1
+0.1
-0.1
+0.0
-0.0
phage
RB68
+0.0
+0.1
-0.3
+0.0
+0.1
phage
Bas38
+0.1
-0.1
-0.2
+0.1
-0.0
no phage control
Control_ECOR38
-0.1
+0.0
+0.2
+0.1
-0.1
phage
Bas39
+0.2
+0.0
-0.0
+0.1
+0.0
phage
Phi92
+0.0
+1.1
+1.1
-0.2
-0.4
phage
Phi92
+0.1
+0.8
+1.6
+0.0
-0.6
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