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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
ygaC and ygaM are separated by 151 nucleotides
ygaM and HEPCGN_20210 are separated by 82 nucleotides
HEPCGN_20210 and HEPCGN_20215 overlap by 1 nucleotides
HEPCGN_20215 and HEPCGN_20220 are separated by 41 nucleotides
HEPCGN_20200: ygaC - DUF2002 domain-containing protein, at 2,788,124 to 2,788,468
ygaC
HEPCGN_20205: ygaM - Uncharacterized protein YgaM, at 2,788,620 to 2,788,949
ygaM
HEPCGN_20210: HEPCGN_20210 - carbohydrate kinase, at 2,789,032 to 2,789,715
_20210
HEPCGN_20215: HEPCGN_20215 - Putative tail fiber assembly protein (Possibly partial), at 2,789,715 to 2,790,110
_20215
HEPCGN_20220: HEPCGN_20220 - acyltransferase, at 2,790,152 to 2,791,177
_20220
Group
Condition
HEPCGN
_20200
HEPCGN
_20205
HEPCGN
_20210
HEPCGN
_20215
HEPCGN
_20220
ygaC
ygaM
phage
K20
+0.0
-0.2
-0.1
-0.1
-2.7
phage
K20
+0.1
-0.0
-0.2
-0.2
-2.1
phage
Bas19
+0.0
-0.3
-0.2
-0.1
-0.3
phage
Phi92
-0.1
-0.6
-0.1
-0.4
+0.4
phage
Bas38
-0.2
-0.6
-0.1
-0.0
+0.2
carbon source
Sodium-DL-Lactate
+0.1
-0.0
-0.1
-0.1
-0.5
phage
Bas39
+0.0
-0.4
+0.0
+0.0
-0.2
phage
Phi92
+0.3
-1.1
-0.1
+0.0
+0.4
phage
Bas19
-0.2
-0.3
-0.2
-0.1
+0.3
phage
TP7
-0.0
-0.7
-0.1
+0.1
+0.3
phage
Bas48
-0.1
-0.3
+0.1
+0.1
-0.2
phage
RB23
+0.1
-0.0
+0.1
+0.5
-1.0
phage
TP7
+0.1
-0.2
-0.0
+0.0
-0.3
phage
Bas48
+0.2
+0.1
-0.4
-0.7
+0.5
carbon source
Sodium-DL-Lactate
+0.2
+0.1
-0.0
-0.3
-0.1
phage
RB68
+0.1
-0.0
+0.1
+0.2
-0.5
phage
Bas55
-0.2
-0.2
+0.3
-0.1
+0.1
no phage control
Control_ECOR38
-0.1
+0.8
-0.0
-0.3
-0.5
phage
Bas55
-0.0
+0.1
-0.1
-0.2
+0.3
carbon source
L-Arabinose
+0.0
+0.2
-0.1
+0.2
-0.1
carbon source
L-Arabinose
+0.1
+0.3
+0.2
-0.1
-0.2
phage
RB23
+0.1
+0.6
+0.2
-0.1
-0.3
phage
Bas38
+0.0
+0.3
+0.1
+0.2
-0.1
no phage control
Control_ECOR38
+0.0
+0.6
+0.1
-0.0
-0.3
carbon source
D-Glucose
+0.1
+0.5
+0.1
-0.0
-0.1
phage
Bas51
+0.2
+0.4
-0.0
+0.1
-0.1
carbon source
Casamino-acids
-0.2
+0.5
+0.0
+0.0
+0.4
phage
Bas39
+0.1
+0.8
-0.1
-0.1
+0.4
carbon source
Casamino-acids
+0.2
+0.5
-0.1
+0.2
+0.3
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