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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
ygaZ and ygaY are separated by 123 nucleotides
ygaY and proX are separated by 191 nucleotides
proX and proW are separated by 56 nucleotides
proW and proV overlap by 8 nucleotides
HEPCGN_19995: ygaZ - L-valine exporter subunit YgaZ, at 2,748,212 to 2,748,949
ygaZ
HEPCGN_20000: ygaY - Putative uncharacterized transporter YgaY, at 2,749,073 to 2,750,257
ygaY
HEPCGN_20010: proX - glycine betaine/L-proline ABC transporter substrate-binding protein ProX, at 2,750,449 to 2,751,441
proX
HEPCGN_20015: proW - glycine betaine/L-proline ABC transporter permease ProW, at 2,751,498 to 2,752,562
proW
HEPCGN_20020: proV - glycine betaine/L-proline ABC transporter ATP-binding protein ProV, at 2,752,555 to 2,753,757
proV
Group
Condition
HEPCGN
_19995
HEPCGN
_20000
HEPCGN
_20010
HEPCGN
_20015
HEPCGN
_20020
ygaZ
ygaY
proX
proW
proV
phage
TP7
-5.4
+0.3
-2.9
-1.7
-2.0
phage
TP7
-4.6
+0.2
-1.9
-1.2
-1.3
phage
Bas19
-5.7
+0.1
-0.8
-0.5
-0.9
phage
Bas19
-5.7
+0.1
-0.9
-0.4
-0.7
phage
RB23
-4.6
+0.1
-0.8
-0.6
-0.5
phage
RB23
-4.4
+0.0
-0.3
-0.0
-0.1
phage
Bas48
+0.6
-0.2
-1.1
-0.2
-0.2
phage
K20
-1.0
+0.0
-0.0
-0.0
-0.1
phage
Bas48
+0.3
+0.0
-0.9
-0.0
-0.3
carbon source
Casamino-acids
-0.3
+0.1
-0.2
+0.0
+0.0
carbon source
Casamino-acids
-0.2
+0.0
-0.0
-0.0
+0.1
carbon source
L-Arabinose
-0.0
-0.1
+0.0
-0.0
+0.0
carbon source
Sodium-DL-Lactate
+0.2
+0.0
-0.1
-0.1
-0.1
phage
K20
+0.2
+0.0
-0.1
-0.1
-0.0
no phage control
Control_ECOR38
+0.1
-0.2
-0.3
+0.3
-0.0
phage
Bas55
+0.1
+0.2
-0.3
-0.1
+0.0
phage
Bas51
-0.3
+0.0
-0.1
+0.2
+0.2
phage
Bas39
+0.1
-0.2
-0.0
+0.2
+0.0
no phage control
Control_ECOR38
-0.0
-0.1
+0.1
+0.1
-0.0
phage
Bas38
+0.2
-0.1
+0.0
+0.1
+0.1
phage
Bas55
+0.2
+0.2
-0.1
-0.2
+0.2
phage
Bas38
-0.0
-0.1
+0.1
+0.2
+0.1
phage
Bas39
+0.2
-0.2
+0.1
+0.1
+0.2
carbon source
L-Arabinose
+0.6
+0.2
+0.2
-0.3
-0.2
carbon source
D-Glucose
+0.4
+0.1
-0.0
-0.0
+0.2
carbon source
Sodium-DL-Lactate
+0.6
-0.1
-0.0
+0.2
-0.1
phage
RB68
+0.1
-0.0
+0.2
+0.1
+0.4
phage
Phi92
+6.1
-0.4
+2.6
+2.6
+3.0
phage
Phi92
+6.1
-0.0
+2.7
+2.9
+2.9
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