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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
hypD and hypC overlap by 1 nucleotides
hypC and hypB overlap by 10 nucleotides
hypB and hypA are separated by 3 nucleotides
hypA and hycA are separated by 211 nucleotides
HEPCGN_19740: hypD - hydrogenase formation protein HypD, at 2,702,898 to 2,704,019
hypD
HEPCGN_19745: hypC - hydrogenase 3 maturation protein HypC, at 2,704,019 to 2,704,291
hypC
HEPCGN_19750: hypB - hydrogenase nickel incorporation protein HypB, at 2,704,282 to 2,705,154
hypB
HEPCGN_19755: hypA - hydrogenase maturation nickel metallochaperone HypA, at 2,705,158 to 2,705,508
hypA
HEPCGN_19760: hycA - formate hydrogenlyase regulator HycA, at 2,705,720 to 2,706,181
hycA
Group
Condition
HEPCGN
_19740
HEPCGN
_19745
HEPCGN
_19750
HEPCGN
_19755
HEPCGN
_19760
hypD
hypC
hypB
hypA
hycA
phage
TP7
-0.5
-0.2
-0.1
-0.3
+0.0
no phage control
Control_ECOR38
+0.0
-0.2
-0.3
-0.3
-0.0
phage
Bas38
-0.1
-0.2
-0.1
-0.1
-0.2
phage
Bas39
+0.1
-0.2
-0.1
-0.2
+0.1
no phage control
Control_ECOR38
-0.0
+0.1
-0.3
-0.1
-0.0
carbon source
Casamino-acids
-0.0
+0.1
-0.2
+0.0
-0.1
phage
RB23
+0.2
-0.7
+0.6
-0.1
-0.1
phage
Bas39
+0.0
+0.1
-0.2
-0.1
+0.1
phage
RB23
-0.0
+0.1
-0.2
-0.1
+0.2
phage
K20
-0.0
-0.4
+0.1
+0.0
+0.4
carbon source
L-Arabinose
-0.2
+0.0
+0.6
-0.2
-0.2
phage
Bas38
-0.0
-0.2
-0.1
+0.2
+0.3
phage
Bas55
-0.1
-0.2
+0.2
+0.1
+0.2
phage
Bas19
+0.1
-0.1
+0.1
-0.3
+0.3
phage
K20
-0.0
-0.2
+0.3
+0.1
+0.0
carbon source
L-Arabinose
+0.2
+0.1
+0.3
-0.1
-0.2
phage
Bas51
+0.3
+0.1
-0.1
-0.0
-0.0
phage
Bas55
+0.1
-0.3
+0.3
-0.1
+0.3
carbon source
Sodium-DL-Lactate
-0.0
-0.1
+0.2
+0.3
-0.1
carbon source
D-Glucose
+0.1
-0.1
+0.2
+0.0
+0.1
phage
Bas19
+0.1
-0.2
+0.4
-0.0
+0.3
carbon source
Casamino-acids
-0.0
+0.1
+0.3
+0.1
+0.1
phage
Bas48
-0.0
-0.2
-0.3
+0.6
+0.4
phage
TP7
-0.0
+0.2
-0.1
+0.3
+0.3
phage
Bas48
+0.1
+0.2
-0.1
+0.4
+0.2
carbon source
Sodium-DL-Lactate
+0.0
-0.1
+0.2
+0.7
+0.0
phage
Phi92
+0.1
-0.2
+0.8
-0.4
+0.6
phage
RB68
-0.1
+0.1
+0.5
+0.2
+0.3
phage
Phi92
-0.1
+0.2
+0.1
+0.1
+1.0
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