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Protein
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Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
recB and recD overlap by 1 nucleotides
recD and argA are separated by 61 nucleotides
argA and amiC are separated by 231 nucleotides
amiC and fMet_trna are separated by 74 nucleotides
HEPCGN_19305: recB - exodeoxyribonuclease V subunit beta, at 2,614,410 to 2,617,952
recB
HEPCGN_19310: recD - exodeoxyribonuclease V subunit alpha, at 2,617,952 to 2,619,778
recD
HEPCGN_19315: argA - amino-acid N-acetyltransferase, at 2,619,840 to 2,621,171
argA
HEPCGN_19320: amiC - N-acetylmuramoyl-L-alanine amidase AmiC, at 2,621,403 to 2,622,656
amiC
HEPCGN_19325: fMet_trna - tRNA-fMet(cat), at 2,622,731 to 2,622,807
_trna
Group
Condition
HEPCGN
_19305
HEPCGN
_19310
HEPCGN
_19315
HEPCGN
_19320
HEPCGN
_19325
recB
recD
argA
amiC
fMet_trna
carbon source
Sodium-DL-Lactate
-2.3
-1.3
-4.3
+0.2
N.D.
carbon source
D-Glucose
-4.7
-1.2
-2.1
+0.4
N.D.
carbon source
Sodium-DL-Lactate
-3.0
-0.8
-3.2
+0.1
N.D.
carbon source
L-Arabinose
-3.2
-0.7
-2.4
+0.2
N.D.
phage
TP7
-1.4
-2.5
-0.3
-0.7
N.D.
carbon source
L-Arabinose
-2.1
-1.6
-1.7
+0.4
N.D.
phage
TP7
-1.7
-2.4
-0.1
-0.2
N.D.
phage
Bas48
-1.8
-1.7
-0.0
-0.7
N.D.
phage
RB23
-1.1
-2.4
-0.1
-0.1
N.D.
carbon source
Casamino-acids
-2.9
-0.6
-0.2
+0.1
N.D.
phage
RB23
-1.4
-1.7
+0.0
-0.4
N.D.
phage
Bas48
-1.6
-1.5
+0.0
-0.1
N.D.
phage
Bas39
-2.8
-0.6
+0.3
+0.2
N.D.
phage
Bas38
-2.6
-0.2
-0.2
+0.1
N.D.
phage
Bas55
-1.5
-1.1
+0.1
-0.3
N.D.
phage
Bas19
-1.5
-1.0
-0.1
-0.1
N.D.
phage
RB68
-1.8
-0.7
+0.0
-0.1
N.D.
carbon source
Casamino-acids
-2.5
-0.7
+0.3
+0.3
N.D.
phage
Bas51
-2.1
-0.7
+0.1
+0.2
N.D.
no phage control
Control_ECOR38
-1.8
-0.9
+0.0
+0.2
N.D.
phage
Bas19
-1.1
-1.2
-0.0
+0.0
N.D.
phage
K20
-1.5
-0.7
+0.2
-0.3
N.D.
phage
K20
-1.4
-1.1
+0.3
+0.1
N.D.
phage
Bas55
-0.7
-1.1
-0.2
-0.2
N.D.
phage
Bas39
-2.0
-0.1
-0.1
+0.2
N.D.
phage
Phi92
-0.6
-1.4
-0.6
+0.7
N.D.
phage
Bas38
-1.5
+0.1
+0.2
+0.1
N.D.
phage
Phi92
-0.7
-0.9
-0.2
+1.0
N.D.
no phage control
Control_ECOR38
-0.8
+0.0
+0.2
+0.1
N.D.
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