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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
cmtA and yggP are separated by 14 nucleotides
yggP and glpX overlap by 4 nucleotides
glpX and fumE are separated by 21 nucleotides
fumE and coaA overlap by 4 nucleotides
HEPCGN_18645: cmtA - PTS mannitol transporter subunit IICB, at 2,474,418 to 2,475,806
cmtA
HEPCGN_18650: yggP - Uncharacterized protein YggP, at 2,475,821 to 2,477,098
yggP
HEPCGN_18655: glpX - class II fructose-bisphosphatase, at 2,477,095 to 2,478,060
glpX
HEPCGN_18660: fumE - fumarase E, at 2,478,082 to 2,478,591
fumE
HEPCGN_18665: coaA - nucleoside/nucleotide kinase family protein, at 2,478,588 to 2,479,301
coaA
Group
Condition
HEPCGN
_18645
HEPCGN
_18650
HEPCGN
_18655
HEPCGN
_18660
HEPCGN
_18665
cmtA
yggP
glpX
fumE
coaA
phage
RB23
+0.1
+0.0
-0.2
-0.6
-0.0
phage
TP7
-0.1
-0.3
-0.3
-0.0
-0.1
carbon source
Casamino-acids
-0.1
-0.1
+0.0
-0.3
-0.3
phage
RB68
+0.0
-0.0
-0.0
-0.3
-0.2
carbon source
D-Glucose
+0.0
-0.1
-0.1
-0.3
-0.0
phage
Bas48
-0.2
+0.0
+0.1
-0.3
-0.1
carbon source
L-Arabinose
-0.0
-0.0
+0.1
-0.4
-0.2
carbon source
Sodium-DL-Lactate
+0.1
+0.0
-0.0
-0.5
-0.0
phage
Bas55
-0.1
-0.1
-0.0
-0.1
-0.1
phage
K20
-0.0
+0.1
-0.2
-0.2
-0.1
carbon source
L-Arabinose
-0.0
-0.1
+0.2
-0.4
-0.0
phage
Bas19
-0.1
-0.0
+0.2
-0.2
-0.2
carbon source
Sodium-DL-Lactate
+0.1
+0.1
-0.0
-0.3
-0.2
phage
Bas48
-0.2
-0.1
+0.1
+0.1
+0.0
phage
Phi92
+0.1
+0.1
-0.2
+0.0
-0.1
carbon source
Casamino-acids
+0.1
+0.1
-0.0
-0.1
-0.1
phage
Bas55
+0.1
-0.0
-0.1
+0.0
-0.1
phage
Bas19
-0.2
-0.1
+0.1
+0.1
+0.0
phage
K20
-0.0
+0.0
-0.1
+0.1
-0.0
phage
Bas38
-0.1
-0.0
-0.1
+0.2
+0.1
phage
TP7
-0.1
+0.0
+0.1
+0.0
+0.0
phage
RB23
-0.1
+0.1
+0.0
+0.2
-0.1
phage
Bas38
-0.0
+0.0
-0.1
-0.0
+0.2
phage
Phi92
+0.1
-0.1
+0.1
+0.6
-0.5
no phage control
Control_ECOR38
-0.2
+0.1
-0.0
+0.1
+0.2
phage
Bas39
+0.0
-0.1
+0.1
+0.1
+0.3
phage
Bas51
-0.1
-0.0
+0.0
+0.2
+0.2
no phage control
Control_ECOR38
+0.0
-0.0
-0.1
+0.4
+0.2
phage
Bas39
-0.0
+0.0
-0.0
+0.7
+0.1
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