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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
iutA and iucD are separated by 81 nucleotides
iucD and iucC overlap by 4 nucleotides
iucC and iucB overlap by 1 nucleotides
iucB and iucA are separated by 0 nucleotides
HEPCGN_18265: iutA - ferric aerobactin receptor IutA, at 2,405,010 to 2,407,211
iutA
HEPCGN_18270: iucD - NADPH-dependent L-lysine N(6)-monooxygenase IucD, at 2,407,293 to 2,408,570
iucD
HEPCGN_18275: iucC - NIS family aerobactin synthetase IucC, at 2,408,567 to 2,410,309
iucC
HEPCGN_18280: iucB - N(6)-hydroxylysine O-acetyltransferase IucB, at 2,410,309 to 2,411,256
iucB
HEPCGN_18285: iucA - aerobactin synthase IucA, at 2,411,257 to 2,412,981
iucA
Group
Condition
HEPCGN
_18265
HEPCGN
_18270
HEPCGN
_18275
HEPCGN
_18280
HEPCGN
_18285
iutA
iucD
iucC
iucB
iucA
carbon source
Sodium-DL-Lactate
-0.2
-0.2
-0.1
+0.4
-0.5
phage
Phi92
-0.1
+0.1
-0.1
-0.1
-0.2
phage
RB68
-0.1
+0.0
-0.0
-0.2
-0.1
phage
Bas38
-0.0
-0.1
-0.1
+0.0
-0.1
phage
TP7
-0.0
+0.1
+0.1
-0.1
-0.3
no phage control
Control_ECOR38
-0.1
-0.0
-0.1
-0.1
+0.1
phage
Bas38
-0.1
+0.0
-0.1
+0.1
-0.1
phage
Bas39
-0.1
-0.0
-0.1
+0.1
-0.0
phage
Bas19
+0.1
-0.1
-0.1
+0.0
-0.0
phage
Phi92
+0.0
+0.2
+0.0
-0.2
-0.1
phage
Bas19
+0.1
+0.0
+0.0
-0.2
-0.0
phage
Bas39
+0.0
-0.0
-0.0
+0.1
+0.0
phage
K20
+0.1
+0.1
+0.1
+0.0
-0.2
no phage control
Control_ECOR38
+0.0
-0.1
+0.0
+0.0
+0.1
carbon source
Sodium-DL-Lactate
-0.1
-0.0
-0.1
+0.2
+0.1
phage
RB23
+0.3
-0.0
+0.0
-0.2
+0.1
phage
K20
+0.1
+0.0
+0.1
+0.0
+0.0
phage
Bas48
+0.0
+0.1
-0.1
+0.2
+0.1
carbon source
Casamino-acids
-0.0
+0.0
-0.1
+0.2
+0.2
phage
RB23
+0.0
+0.1
-0.0
+0.2
+0.1
phage
Bas55
+0.0
+0.1
-0.0
+0.3
-0.0
phage
Bas55
-0.0
+0.2
-0.0
+0.1
+0.1
carbon source
Casamino-acids
-0.0
+0.0
-0.0
+0.2
+0.2
phage
Bas51
+0.2
+0.0
+0.1
+0.1
+0.1
carbon source
D-Glucose
+0.0
+0.0
+0.2
+0.1
+0.3
carbon source
L-Arabinose
-0.0
-0.0
+0.1
+0.2
+0.5
phage
TP7
+0.0
+0.4
-0.0
+0.3
+0.2
phage
Bas48
+0.0
+0.1
+0.1
+0.5
+0.3
carbon source
L-Arabinose
+0.2
+0.0
+0.2
+0.4
+0.5
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