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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
gspL and yghD are separated by 1 nucleotides
yghD and kpsM are separated by 1058 nucleotides
kpsM and kpsT overlap by 4 nucleotides
kpsT and neuD are separated by 49 nucleotides
HEPCGN_18090: gspL - general secretion pathway protein L, at 2,366,676 to 2,367,854
gspL
HEPCGN_18095: yghD - GspM family type II secretion system protein YghD, at 2,367,856 to 2,368,392
yghD
HEPCGN_18100: kpsM - Polysialic acid transport protein, at 2,369,451 to 2,370,227
kpsM
HEPCGN_18105: kpsT - Polysialic acid transport ATP-binding protein, at 2,370,224 to 2,370,883
kpsT
HEPCGN_18110: neuD - NeuD protein involved in sialic acid synthesis, at 2,370,933 to 2,371,556
neuD
Group
Condition
HEPCGN
_18090
HEPCGN
_18095
HEPCGN
_18100
HEPCGN
_18105
HEPCGN
_18110
gspL
yghD
kpsM
kpsT
neuD
phage
RB23
-0.2
-0.2
-4.0
-5.4
-6.6
phage
Bas19
-0.2
-0.3
-3.8
-5.2
-6.4
phage
RB23
+0.1
-0.5
-3.7
-5.1
-6.3
phage
Bas19
+0.1
+0.1
-3.8
-5.1
-6.3
phage
TP7
+0.1
-0.2
-3.2
-5.1
-6.4
phage
TP7
+0.2
+0.5
-3.2
-4.9
-6.1
phage
K20
+0.0
-0.2
-2.9
-5.3
-4.8
phage
RB68
-0.0
-0.1
-3.5
-5.5
-4.1
phage
K20
-0.1
+0.2
-3.9
-5.3
-3.7
phage
Bas51
+0.1
-0.1
-1.1
-0.9
-0.4
phage
Bas39
-0.3
-0.5
-0.3
-0.0
-0.0
no phage control
Control_ECOR38
+0.0
-0.0
-0.2
-0.3
-0.2
phage
Bas38
-0.0
+0.0
-0.3
+0.1
+0.1
phage
Bas39
-0.2
-0.3
-0.4
+0.5
+0.4
no phage control
Control_ECOR38
+0.2
-0.2
-0.5
-0.2
+0.7
carbon source
Casamino-acids
-0.1
+0.0
-0.6
+0.6
+0.3
phage
Bas38
+0.2
-0.1
-0.6
+0.3
+0.6
carbon source
Casamino-acids
-0.2
+0.1
-0.3
+0.6
+0.4
carbon source
Sodium-DL-Lactate
-0.1
+0.0
-0.1
+0.2
+0.7
phage
Bas55
+0.5
+0.2
-0.2
-0.1
+0.4
carbon source
D-Glucose
+0.3
+0.0
-0.3
+0.4
+0.4
carbon source
L-Arabinose
+0.1
-0.3
+0.1
+0.7
+0.6
carbon source
L-Arabinose
+0.2
-0.1
+0.0
+0.6
+0.5
carbon source
Sodium-DL-Lactate
+0.1
+0.1
-0.1
+0.9
+0.8
phage
Bas48
+1.9
+1.8
-0.4
-0.9
-0.7
phage
Bas55
+0.5
+0.4
-0.0
+0.5
+0.5
phage
Bas48
+2.1
+1.8
-0.3
+0.2
+0.0
phage
Phi92
-0.4
-0.2
+6.8
+7.5
+7.1
phage
Phi92
-0.1
-0.4
+7.0
+7.8
+7.3
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