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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
sslE and pppA are separated by 129 nucleotides
pppA and gspS2 are separated by 65 nucleotides
gspS2 and gspC are separated by 134 nucleotides
gspC and gspD are separated by 29 nucleotides
HEPCGN_18030: sslE - lipoprotein metalloprotease SslE, at 2,351,942 to 2,356,498
sslE
HEPCGN_18035: pppA - prepilin peptidase PppA, at 2,356,628 to 2,357,437
pppA
HEPCGN_18040: gspS2 - Pilotin AspS 2, at 2,357,503 to 2,357,913
gspS2
HEPCGN_18045: gspC - type II secretion system protein GspC, at 2,358,048 to 2,358,890
gspC
HEPCGN_18050: gspD - general secretion pathway protein D, at 2,358,920 to 2,360,980
gspD
Group
Condition
HEPCGN
_18030
HEPCGN
_18035
HEPCGN
_18040
HEPCGN
_18045
HEPCGN
_18050
sslE
pppA
gspS2
gspC
gspD
phage
Phi92
-0.0
-0.3
-0.4
-0.8
-0.1
carbon source
D-Glucose
-0.1
-0.4
-0.3
-0.3
-0.1
carbon source
L-Arabinose
-0.2
-0.3
-0.3
-0.0
-0.1
carbon source
Sodium-DL-Lactate
+0.0
-0.2
-0.4
-0.1
+0.0
carbon source
Casamino-acids
-0.0
-0.4
-0.0
-0.2
-0.0
no phage control
Control_ECOR38
-0.1
-0.4
+0.1
-0.1
-0.1
carbon source
L-Arabinose
-0.0
-0.2
-0.1
-0.3
+0.1
phage
Bas51
+0.0
-0.2
-0.1
+0.1
-0.0
phage
Bas38
+0.0
-0.2
+0.2
-0.1
-0.0
carbon source
Casamino-acids
+0.0
-0.2
+0.2
+0.0
+0.0
phage
Bas39
+0.1
+0.1
-0.1
-0.1
+0.1
phage
K20
+0.1
-0.0
-0.2
+0.1
+0.0
phage
TP7
+0.1
+0.3
-0.6
+0.1
+0.2
phage
K20
+0.0
+0.1
-0.2
+0.1
+0.1
phage
Bas19
+0.1
+0.0
+0.2
-0.1
+0.0
phage
Bas39
-0.0
-0.2
+0.2
+0.2
+0.0
carbon source
Sodium-DL-Lactate
+0.1
+0.1
+0.1
-0.0
-0.0
phage
Bas38
-0.0
+0.1
+0.1
+0.1
+0.0
phage
RB68
+0.1
-0.1
+0.3
-0.0
+0.1
phage
Phi92
-0.1
+0.2
-0.0
+0.4
-0.1
no phage control
Control_ECOR38
-0.0
+0.0
+0.5
-0.1
+0.0
phage
Bas19
+0.1
+0.2
+0.1
+0.1
+0.0
phage
TP7
+0.0
+0.0
+0.3
+0.2
+0.1
phage
RB23
+0.1
+0.3
-0.0
+0.3
+0.0
phage
RB23
+0.1
-0.0
+0.3
+0.5
+0.1
phage
Bas55
+0.3
+0.5
+0.4
+0.4
+0.4
phage
Bas55
+0.5
+0.3
+0.7
+0.9
+0.3
phage
Bas48
+1.9
+1.8
+2.0
+1.9
+2.0
phage
Bas48
+2.1
+2.1
+2.2
+2.1
+2.1
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