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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
yqhD and yqhC are separated by 136 nucleotides
yqhC and yghB are separated by 39 nucleotides
yghB and metC are separated by 139 nucleotides
metC and exbB are separated by 251 nucleotides
HEPCGN_17810: yqhD - alcohol dehydrogenase, at 2,307,629 to 2,308,792
yqhD
HEPCGN_17815: yqhC - DNA-binding transcriptional regulator YqhC, at 2,308,929 to 2,309,885
yqhC
HEPCGN_17820: yghB - Inner membrane protein YghB, at 2,309,925 to 2,310,584
yghB
HEPCGN_17825: metC - cystathionine beta-lyase, at 2,310,724 to 2,311,911
metC
HEPCGN_17830: exbB - tol-pal system-associated acyl-CoA thioesterase, at 2,312,163 to 2,312,897
exbB
Group
Condition
HEPCGN
_17810
HEPCGN
_17815
HEPCGN
_17820
HEPCGN
_17825
HEPCGN
_17830
yqhD
yqhC
yghB
metC
exbB
carbon source
D-Glucose
-0.4
+0.2
+0.1
-4.0
-0.2
carbon source
Sodium-DL-Lactate
-0.1
-0.0
+0.0
-3.5
-0.4
carbon source
Sodium-DL-Lactate
+0.2
-0.1
+0.0
-3.6
-0.4
carbon source
L-Arabinose
-0.2
+0.0
+0.1
-3.4
-0.3
carbon source
L-Arabinose
+0.1
-0.4
+0.1
-3.0
-0.3
phage
TP7
+0.3
-0.2
-1.1
+0.0
-2.1
phage
TP7
+0.3
+0.4
-0.9
-0.2
-1.8
phage
RB23
+0.2
+0.0
-0.9
-0.3
-1.2
phage
Bas48
-0.3
-0.3
-0.8
-0.3
-0.1
phage
RB23
-0.2
-0.1
-0.6
-0.2
-0.5
phage
Bas19
-0.0
+0.1
-0.5
-0.2
-0.7
phage
Bas19
-0.1
+0.1
-0.2
-0.2
-0.8
carbon source
Casamino-acids
-0.3
-0.1
-0.2
+0.2
-0.4
phage
Bas39
-0.0
-0.2
-0.1
-0.1
-0.4
phage
Bas55
+0.1
+0.0
-0.2
-0.2
-0.2
phage
RB68
+0.1
+0.0
-0.4
-0.2
-0.0
phage
Bas38
+0.0
-0.1
-0.1
-0.0
-0.3
phage
Bas39
-0.1
+0.0
-0.2
+0.0
-0.2
phage
Bas55
+0.3
+0.2
-0.3
-0.2
-0.3
no phage control
Control_ECOR38
+0.1
+0.0
-0.1
-0.2
-0.3
phage
Bas51
-0.1
-0.2
+0.3
-0.0
-0.1
phage
Bas48
+0.4
-0.0
-0.2
-0.2
-0.1
carbon source
Casamino-acids
+0.0
-0.1
+0.1
+0.2
-0.4
phage
Bas38
+0.3
-0.1
-0.1
+0.0
-0.1
no phage control
Control_ECOR38
+0.0
-0.1
+0.1
-0.1
+0.1
phage
K20
+0.2
+0.2
+0.1
-0.2
-0.3
phage
K20
+0.1
+0.2
+0.0
-0.0
-0.3
phage
Phi92
+0.2
-0.1
-0.1
-0.2
+1.8
phage
Phi92
+0.3
+0.2
+0.5
+0.2
+2.0
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