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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
folB and bacA are separated by 90 nucleotides
bacA and cca are separated by 180 nucleotides
cca and ygiM are separated by 63 nucleotides
ygiM and ygiF are separated by 241 nucleotides
HEPCGN_17555: folB - bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase, at 2,259,765 to 2,260,133
folB
HEPCGN_17560: bacA - undecaprenyl-diphosphate phosphatase, at 2,260,224 to 2,261,045
bacA
HEPCGN_17570: cca - fused tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca, at 2,261,226 to 2,262,464
cca
HEPCGN_17575: ygiM - TIGR04211 family SH3 domain-containing protein, at 2,262,528 to 2,263,148
ygiM
HEPCGN_17580: ygiF - inorganic triphosphatase, at 2,263,390 to 2,264,691
ygiF
Group
Condition
HEPCGN
_17555
HEPCGN
_17560
HEPCGN
_17570
HEPCGN
_17575
HEPCGN
_17580
folB
bacA
cca
ygiM
ygiF
phage
Bas48
N.D.
-0.0
N.D.
-0.1
-0.5
phage
RB23
N.D.
-0.6
N.D.
-0.1
+0.2
carbon source
Casamino-acids
N.D.
-0.1
N.D.
-0.0
-0.3
carbon source
Sodium-DL-Lactate
N.D.
+0.0
N.D.
-0.2
-0.3
phage
Bas19
N.D.
-0.2
N.D.
-0.2
-0.0
phage
K20
N.D.
+0.0
N.D.
-0.0
-0.4
phage
Bas55
N.D.
-0.2
N.D.
-0.1
-0.0
phage
Bas38
N.D.
-0.1
N.D.
+0.0
-0.3
phage
Bas39
N.D.
-0.1
N.D.
+0.1
-0.3
phage
Bas48
N.D.
+0.2
N.D.
-0.3
-0.3
phage
K20
N.D.
-0.2
N.D.
+0.0
-0.1
carbon source
D-Glucose
N.D.
-0.2
N.D.
-0.2
+0.1
phage
Bas39
N.D.
+0.0
N.D.
-0.0
-0.2
no phage control
Control_ECOR38
N.D.
-0.0
N.D.
+0.2
-0.3
phage
Bas51
N.D.
-0.0
N.D.
-0.0
-0.1
carbon source
L-Arabinose
N.D.
-0.0
N.D.
+0.0
-0.1
phage
RB23
N.D.
-0.2
N.D.
-0.0
+0.1
carbon source
L-Arabinose
N.D.
+0.0
N.D.
+0.1
-0.2
carbon source
Casamino-acids
N.D.
+0.2
N.D.
-0.1
-0.1
phage
Bas55
N.D.
+0.0
N.D.
-0.0
-0.0
no phage control
Control_ECOR38
N.D.
-0.0
N.D.
+0.2
-0.1
phage
TP7
N.D.
-0.3
N.D.
-0.0
+0.4
phage
RB68
N.D.
+0.1
N.D.
+0.2
-0.3
phage
Bas38
N.D.
-0.0
N.D.
+0.2
-0.1
phage
Bas19
N.D.
-0.1
N.D.
+0.1
+0.0
phage
TP7
N.D.
-0.5
N.D.
+0.2
+0.5
carbon source
Sodium-DL-Lactate
N.D.
+0.2
N.D.
+0.1
+0.1
phage
Phi92
N.D.
-0.2
N.D.
+0.1
+1.0
phage
Phi92
N.D.
+0.1
N.D.
+0.2
+0.6
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