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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
rpsU and tsaD are separated by 236 nucleotides
tsaD and ttdT are separated by 42 nucleotides
ttdT and ttdB are separated by 48 nucleotides
ttdB and ttdA overlap by 4 nucleotides
HEPCGN_17520: rpsU - 30S ribosomal protein S21, at 2,253,358 to 2,253,573
rpsU
HEPCGN_17525: tsaD - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 2,253,810 to 2,254,823
tsaD
HEPCGN_17530: ttdT - L-tartrate/succinate antiporter, at 2,254,866 to 2,256,329
ttdT
HEPCGN_17535: ttdB - L(+)-tartrate dehydratase subunit beta, at 2,256,378 to 2,256,983
ttdB
HEPCGN_17540: ttdA - L(+)-tartrate dehydratase subunit alpha, at 2,256,980 to 2,257,891
ttdA
Group
Condition
HEPCGN
_17520
HEPCGN
_17525
HEPCGN
_17530
HEPCGN
_17535
HEPCGN
_17540
rpsU
tsaD
ttdT
ttdB
ttdA
phage
TP7
N.D.
N.D.
-0.0
-1.1
-0.0
phage
TP7
N.D.
N.D.
+0.1
-0.7
-0.3
carbon source
Sodium-DL-Lactate
N.D.
N.D.
+0.1
-0.8
-0.2
carbon source
Casamino-acids
N.D.
N.D.
-0.0
-0.6
-0.2
carbon source
L-Arabinose
N.D.
N.D.
-0.1
-0.4
-0.1
phage
Bas19
N.D.
N.D.
-0.0
-0.2
-0.1
phage
Bas48
N.D.
N.D.
-0.1
-0.2
-0.0
phage
K20
N.D.
N.D.
-0.1
-0.3
+0.1
phage
RB23
N.D.
N.D.
-0.0
-0.0
-0.2
phage
RB23
N.D.
N.D.
+0.1
+0.1
-0.3
carbon source
Sodium-DL-Lactate
N.D.
N.D.
-0.1
-0.0
+0.1
phage
Bas39
N.D.
N.D.
+0.1
-0.4
+0.3
no phage control
Control_ECOR38
N.D.
N.D.
-0.0
-0.1
+0.2
phage
Bas55
N.D.
N.D.
+0.0
+0.1
-0.1
carbon source
L-Arabinose
N.D.
N.D.
+0.1
-0.2
+0.2
carbon source
Casamino-acids
N.D.
N.D.
+0.0
-0.0
+0.2
phage
Bas19
N.D.
N.D.
+0.0
+0.3
-0.2
phage
Bas48
N.D.
N.D.
+0.0
+0.2
-0.0
no phage control
Control_ECOR38
N.D.
N.D.
-0.0
+0.2
+0.1
phage
K20
N.D.
N.D.
-0.0
+0.5
-0.3
phage
RB68
N.D.
N.D.
+0.0
+0.1
+0.2
carbon source
D-Glucose
N.D.
N.D.
-0.0
+0.4
-0.0
phage
Bas39
N.D.
N.D.
+0.1
+0.1
+0.2
phage
Phi92
N.D.
N.D.
+0.0
-0.5
+0.9
phage
Bas55
N.D.
N.D.
-0.1
+0.3
+0.2
phage
Bas38
N.D.
N.D.
+0.2
+0.1
+0.1
phage
Bas51
N.D.
N.D.
+0.0
+0.2
+0.3
phage
Bas38
N.D.
N.D.
+0.1
+0.4
+0.2
phage
Phi92
N.D.
N.D.
+0.0
+0.5
+0.3
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