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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
dolP and diaA are separated by 9 nucleotides
diaA and yraN are separated by 19 nucleotides
yraN and lpoA overlap by 43 nucleotides
lpoA and rsmI are separated by 64 nucleotides
HEPCGN_17090: dolP - division/outer membrane stress-associated lipid-binding lipoprotein, at 2,164,784 to 2,165,359
dolP
HEPCGN_17095: diaA - DnaA initiator-associating protein DiaA, at 2,165,369 to 2,165,959
diaA
HEPCGN_17100: yraN - YraN family protein, at 2,165,979 to 2,166,374
yraN
HEPCGN_17105: lpoA - penicillin-binding protein activator LpoA, at 2,166,332 to 2,168,368
lpoA
HEPCGN_17110: rsmI - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 2,168,433 to 2,169,296
rsmI
Group
Condition
HEPCGN
_17090
HEPCGN
_17095
HEPCGN
_17100
HEPCGN
_17105
HEPCGN
_17110
dolP
diaA
yraN
lpoA
rsmI
phage
Phi92
-0.0
+0.4
-0.3
-3.1
-0.3
phage
TP7
-3.9
+0.5
-0.0
+2.1
-0.8
carbon source
L-Arabinose
-0.0
+0.1
-0.5
-0.4
-0.5
carbon source
Sodium-DL-Lactate
-0.3
+0.1
+0.1
-0.3
-0.6
phage
Phi92
+1.0
+1.0
-0.1
-2.4
-0.2
carbon source
Sodium-DL-Lactate
+0.1
+0.4
-0.2
-0.2
-0.5
phage
K20
-0.4
+0.1
-0.2
+0.0
+0.1
no phage control
Control_ECOR38
+0.3
-0.2
-0.0
-0.1
-0.2
phage
Bas19
-0.3
+0.3
+0.1
+0.5
-0.6
phage
Bas55
-0.0
-0.0
-0.2
-0.1
+0.3
carbon source
L-Arabinose
+0.0
+0.4
+0.0
-0.3
-0.1
phage
RB23
-0.2
+0.1
-0.0
+0.5
-0.3
phage
RB68
+0.0
-0.0
+0.0
+0.2
-0.2
no phage control
Control_ECOR38
+0.2
-0.1
+0.0
+0.1
-0.1
phage
K20
-0.0
+0.2
-0.0
+0.0
-0.1
phage
Bas38
+0.1
-0.0
+0.3
+0.1
-0.2
phage
Bas48
-0.2
+0.1
+0.2
+0.4
-0.2
phage
Bas55
-0.0
-0.0
+0.1
+0.3
+0.0
carbon source
Casamino-acids
-0.1
+0.4
+0.3
-0.2
-0.1
carbon source
D-Glucose
+0.0
+0.4
+0.1
+0.1
-0.2
phage
Bas38
+0.4
-0.1
+0.0
+0.0
+0.1
phage
Bas51
+0.4
+0.1
+0.3
-0.2
-0.0
phage
RB23
+0.2
+0.4
-0.4
+0.9
-0.5
phage
Bas39
+0.5
-0.1
+0.3
-0.1
+0.0
carbon source
Casamino-acids
+0.4
+0.4
+0.2
-0.0
-0.2
phage
Bas48
-0.0
+0.5
-0.3
+0.2
+0.3
phage
Bas39
+0.2
+0.0
+0.5
+0.0
-0.0
phage
TP7
-0.7
+0.3
+0.1
+2.0
-0.9
phage
Bas19
+0.5
+0.1
+0.6
+0.7
-0.2
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