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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
lptA and lptC overlap by 32 nucleotides
lptC and kdsC overlap by 4 nucleotides
kdsC and kdsD are separated by 20 nucleotides
kdsD and yrbG are separated by 13 nucleotides
HEPCGN_16825: lptA - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 2,118,051 to 2,118,608
lptA
HEPCGN_16830: lptC - LPS export ABC transporter periplasmic protein LptC, at 2,118,577 to 2,119,152
lptC
HEPCGN_16835: kdsC - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 2,119,149 to 2,119,715
kdsC
HEPCGN_16840: kdsD - arabinose-5-phosphate isomerase KdsD, at 2,119,736 to 2,120,722
kdsD
HEPCGN_16845: yrbG - calcium/sodium antiporter, at 2,120,736 to 2,121,713
yrbG
Group
Condition
HEPCGN
_16825
HEPCGN
_16830
HEPCGN
_16835
HEPCGN
_16840
HEPCGN
_16845
lptA
lptC
kdsC
kdsD
yrbG
phage
TP7
N.D.
-4.7
-5.8
+0.2
+0.4
phage
Phi92
N.D.
-6.0
-1.5
-0.4
+0.2
phage
TP7
N.D.
-3.7
-4.3
+0.4
+0.6
phage
RB23
N.D.
-4.1
-2.6
+0.1
+0.1
phage
Bas48
N.D.
-2.4
-1.7
+0.0
+0.2
phage
Phi92
N.D.
-2.8
-1.1
-0.0
+0.0
phage
Bas48
N.D.
-2.1
-1.8
-0.0
+0.2
phage
RB23
N.D.
-2.9
-0.7
+0.1
+0.3
phage
K20
N.D.
-0.1
-1.9
-0.2
+0.1
phage
Bas19
N.D.
-1.5
-0.2
-0.0
-0.1
phage
Bas19
N.D.
-0.3
-0.8
-0.3
-0.2
phage
Bas55
N.D.
-1.0
-0.7
+0.0
+0.1
phage
Bas55
N.D.
-1.2
-0.3
-0.1
+0.2
phage
RB68
N.D.
+0.2
-1.3
-0.0
-0.0
phage
Bas51
N.D.
-0.2
-0.4
-0.2
-0.0
phage
Bas38
N.D.
-0.3
-0.1
-0.4
+0.0
phage
Bas39
N.D.
-0.1
-0.7
+0.1
+0.1
phage
Bas39
N.D.
-0.2
-0.4
-0.1
+0.2
no phage control
Control_ECOR38
N.D.
-0.1
-0.6
+0.1
+0.1
carbon source
Casamino-acids
N.D.
-0.2
-0.3
-0.0
+0.2
no phage control
Control_ECOR38
N.D.
+0.1
-0.4
-0.3
+0.2
carbon source
Casamino-acids
N.D.
-0.4
-0.1
-0.0
+0.2
carbon source
Sodium-DL-Lactate
N.D.
-0.4
-0.0
+0.1
+0.0
carbon source
L-Arabinose
N.D.
+0.1
-0.3
-0.2
+0.2
phage
Bas38
N.D.
+0.2
-0.2
-0.1
-0.0
carbon source
L-Arabinose
N.D.
+0.5
-0.5
-0.2
+0.0
carbon source
D-Glucose
N.D.
+0.1
-0.1
-0.0
-0.0
phage
K20
N.D.
-0.1
+0.2
-0.0
+0.1
carbon source
Sodium-DL-Lactate
N.D.
+0.0
+0.6
-0.0
+0.1
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