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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
rapZ and ptsN are separated by 45 nucleotides
ptsN and HEPCGN_16810 are separated by 117 nucleotides
HEPCGN_16810 and rpoN are separated by 22 nucleotides
rpoN and lptB are separated by 47 nucleotides
HEPCGN_16800: rapZ - RNase adapter RapZ, at 2,114,019 to 2,114,873
rapZ
HEPCGN_16805: ptsN - PTS IIA-like nitrogen regulatory protein PtsN, at 2,114,919 to 2,115,410
ptsN
HEPCGN_16810: HEPCGN_16810 - Ribosome hibernation promoting factor, at 2,115,528 to 2,115,815
_16810
HEPCGN_16815: rpoN - RNA polymerase factor sigma-54, at 2,115,838 to 2,117,271
rpoN
HEPCGN_16820: lptB - LPS export ABC transporter ATP-binding protein, at 2,117,319 to 2,118,044
lptB
Group
Condition
HEPCGN
_16800
HEPCGN
_16805
HEPCGN
_16810
HEPCGN
_16815
HEPCGN
_16820
rapZ
ptsN
rpoN
lptB
carbon source
Casamino-acids
-1.1
-0.6
-0.3
N.D.
N.D.
carbon source
Casamino-acids
-0.9
-0.6
-0.4
N.D.
N.D.
carbon source
Sodium-DL-Lactate
-0.3
-1.3
-0.3
N.D.
N.D.
carbon source
L-Arabinose
-0.5
-0.9
-0.3
N.D.
N.D.
phage
Bas51
-0.7
-0.5
-0.2
N.D.
N.D.
carbon source
L-Arabinose
-0.5
-0.9
+0.1
N.D.
N.D.
carbon source
Sodium-DL-Lactate
-0.3
-0.5
-0.5
N.D.
N.D.
phage
Bas38
-0.2
-0.7
-0.3
N.D.
N.D.
no phage control
Control_ECOR38
-0.3
-0.4
-0.5
N.D.
N.D.
phage
Bas39
-0.6
-0.2
-0.2
N.D.
N.D.
phage
Bas38
-0.3
-0.3
-0.3
N.D.
N.D.
no phage control
Control_ECOR38
-0.4
-0.3
-0.3
N.D.
N.D.
carbon source
D-Glucose
-0.3
-0.4
-0.2
N.D.
N.D.
phage
Bas39
-0.5
-0.3
-0.0
N.D.
N.D.
phage
RB68
-0.6
-0.2
-0.0
N.D.
N.D.
phage
K20
-0.5
-0.3
+0.1
N.D.
N.D.
phage
K20
-0.5
-0.2
+0.1
N.D.
N.D.
phage
Bas55
-0.1
-0.5
+0.0
N.D.
N.D.
phage
Bas19
+0.2
-0.1
+0.1
N.D.
N.D.
phage
Bas55
-0.1
+0.5
-0.0
N.D.
N.D.
phage
RB23
+0.3
+0.2
+0.2
N.D.
N.D.
phage
Bas19
+0.3
+0.6
-0.0
N.D.
N.D.
phage
Bas48
+1.1
+1.2
+0.3
N.D.
N.D.
phage
RB23
+1.1
+1.2
+0.6
N.D.
N.D.
phage
Bas48
+1.1
+1.5
+0.4
N.D.
N.D.
phage
Phi92
+0.7
+3.0
+1.1
N.D.
N.D.
phage
Phi92
+0.7
+3.3
+1.2
N.D.
N.D.
phage
TP7
+4.0
+3.4
+2.2
N.D.
N.D.
phage
TP7
+4.4
+3.5
+2.6
N.D.
N.D.
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