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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
hofQ and aroK are separated by 400 nucleotides
aroK and aroB are separated by 56 nucleotides
aroB and damX are separated by 91 nucleotides
damX and dam are separated by 106 nucleotides
HEPCGN_15925: hofQ - DNA uptake porin HofQ, at 1,958,448 to 1,959,656
hofQ
HEPCGN_15930: aroK - shikimate kinase AroK, at 1,960,057 to 1,960,578
aroK
HEPCGN_15935: aroB - 3-dehydroquinate synthase, at 1,960,635 to 1,961,723
aroB
HEPCGN_15940: damX - cell division protein DamX, at 1,961,815 to 1,963,101
damX
HEPCGN_15945: dam - adenine-specific DNA-methyltransferase, at 1,963,208 to 1,964,044
dam
Group
Condition
HEPCGN
_15925
HEPCGN
_15930
HEPCGN
_15935
HEPCGN
_15940
HEPCGN
_15945
hofQ
aroK
aroB
damX
dam
carbon source
D-Glucose
-0.1
-4.1
-5.8
-0.5
-2.9
carbon source
Sodium-DL-Lactate
+0.1
-1.2
-7.7
-0.3
-0.4
carbon source
Sodium-DL-Lactate
-0.2
-1.4
-6.1
+0.0
-1.7
carbon source
L-Arabinose
+0.2
-0.7
-4.8
-0.1
-2.4
carbon source
L-Arabinose
+0.1
-2.9
-3.7
-0.0
-0.9
carbon source
Casamino-acids
-0.1
-3.0
-1.3
-0.3
-1.5
phage
TP7
+0.2
-0.0
-3.7
-1.4
-0.9
carbon source
Casamino-acids
+0.2
-1.1
-2.0
-0.2
-2.8
phage
Bas48
-0.1
-0.5
-2.4
-2.0
-0.7
no phage control
Control_ECOR38
+0.1
-2.5
-0.6
-0.4
-1.9
phage
RB23
+0.0
-1.7
-1.4
-0.2
-1.1
phage
Bas51
-0.1
-0.4
-0.5
-0.6
-2.5
phage
Bas38
+0.2
-0.6
-0.6
-0.1
-2.6
phage
Bas39
+0.1
-0.8
-0.2
-0.5
-2.2
phage
Bas38
-0.0
-0.4
-0.6
-0.5
-1.8
phage
TP7
+0.1
+0.9
-2.7
-0.9
-0.8
phage
RB23
+0.2
-0.2
-1.4
-0.9
-1.1
phage
K20
-0.0
-1.6
-0.5
-0.3
-0.5
phage
Bas55
-0.1
-0.7
-0.9
-0.3
-0.7
phage
Bas39
+0.1
-0.4
-0.6
-0.1
-1.5
no phage control
Control_ECOR38
-0.0
+0.2
-0.4
-0.5
-1.7
phage
Bas48
+0.1
+0.7
-1.3
-0.6
-0.9
phage
RB68
+0.2
-0.2
-0.5
-0.4
-0.8
phage
K20
-0.0
+0.8
-0.5
-0.5
-0.7
phage
Bas19
-0.1
+1.1
-1.2
-0.3
-0.5
phage
Bas19
+0.1
+0.9
-1.0
-0.1
-0.8
phage
Bas55
-0.0
+1.3
-0.7
-0.4
-0.6
phage
Phi92
+0.0
+0.2
+1.7
-0.7
+0.3
phage
Phi92
+0.1
+0.8
+1.4
-0.6
-0.1
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