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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
envZ and yiaG are separated by 31 nucleotides
yiaG and HEPCGN_15860 are separated by 58 nucleotides
HEPCGN_15860 and pckA are separated by 114 nucleotides
pckA and yhgE are separated by 378 nucleotides
HEPCGN_15850: envZ - two-component system sensor histidine kinase EnvZ, at 1,942,436 to 1,943,788
envZ
HEPCGN_15855: yiaG - transcriptional regulator, at 1,943,820 to 1,944,116
yiaG
HEPCGN_15860: HEPCGN_15860 - toxin HigB-2, at 1,944,175 to 1,944,492
_15860
HEPCGN_15865: pckA - phosphoenolpyruvate carboxykinase (ATP), at 1,944,607 to 1,946,229
pckA
HEPCGN_15870: yhgE - Uncharacterized protein YhgE, at 1,946,608 to 1,948,332
yhgE
Group
Condition
HEPCGN
_15850
HEPCGN
_15855
HEPCGN
_15860
HEPCGN
_15865
HEPCGN
_15870
envZ
yiaG
pckA
yhgE
phage
Bas38
-0.2
-0.4
-0.3
+0.1
+0.0
phage
TP7
+0.4
-0.4
-0.5
+0.0
-0.1
carbon source
L-Arabinose
+0.3
-0.4
-0.2
-0.3
-0.0
phage
Bas39
-0.1
-0.1
-0.2
-0.2
+0.0
phage
Bas38
-0.2
-0.1
-0.0
-0.1
+0.0
phage
RB23
-0.3
-0.1
+0.1
-0.1
+0.1
phage
Bas39
-0.3
-0.0
-0.2
+0.3
-0.1
carbon source
Sodium-DL-Lactate
+0.2
+0.1
-0.0
-0.4
-0.0
carbon source
Sodium-DL-Lactate
+0.3
+0.3
-0.3
-0.5
-0.1
phage
Bas19
+0.3
-0.3
-0.2
-0.1
+0.1
no phage control
Control_ECOR38
-0.3
+0.1
-0.2
+0.3
-0.1
phage
Bas48
-0.1
-0.1
+0.1
+0.0
-0.0
phage
K20
-0.2
-0.3
+0.2
+0.1
+0.1
phage
Bas55
+0.1
-0.5
+0.2
+0.1
+0.1
no phage control
Control_ECOR38
-0.2
+0.2
+0.1
-0.1
-0.1
phage
Bas55
+0.1
-0.2
+0.1
-0.1
+0.0
carbon source
D-Glucose
+0.3
-0.4
+0.1
-0.0
+0.1
phage
RB68
-0.2
+0.4
-0.2
-0.1
+0.1
phage
Bas51
-0.3
-0.0
-0.1
+0.4
+0.1
phage
Bas19
+0.4
-0.1
-0.0
-0.1
-0.0
phage
TP7
+0.2
-0.1
+0.1
-0.1
+0.0
carbon source
Casamino-acids
+0.0
+0.2
+0.1
-0.2
+0.1
carbon source
Casamino-acids
+0.0
+0.4
-0.2
-0.1
+0.0
phage
K20
-0.3
-0.1
+0.5
+0.1
+0.1
phage
RB23
+0.3
+0.2
-0.1
+0.1
+0.0
phage
Bas48
+0.4
+0.1
+0.0
-0.0
+0.2
carbon source
L-Arabinose
+0.5
+0.4
+0.1
-0.1
+0.1
phage
Phi92
+2.0
-0.3
-0.2
-0.0
-0.1
phage
Phi92
+2.3
-0.3
+0.1
+0.1
-0.0
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