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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
gadE and hdeD are separated by 797 nucleotides
hdeD and hdeA are separated by 254 nucleotides
hdeA and hdeB are separated by 103 nucleotides
hdeB and yhiD are separated by 135 nucleotides
HEPCGN_15195: gadE - acid resistance transcriptional activator GadE, at 1,802,830 to 1,803,357
gadE
HEPCGN_15200: hdeD - acid-resistance protein HdeD, at 1,804,155 to 1,804,727
hdeD
HEPCGN_15205: hdeA - acid-activated periplasmic chaperone HdeA, at 1,804,982 to 1,805,314
hdeA
HEPCGN_15210: hdeB - acid-activated periplasmic chaperone HdeB, at 1,805,418 to 1,805,756
hdeB
HEPCGN_15215: yhiD - MgtC/SapB family protein, at 1,805,892 to 1,806,467
yhiD
Group
Condition
HEPCGN
_15195
HEPCGN
_15200
HEPCGN
_15205
HEPCGN
_15210
HEPCGN
_15215
gadE
hdeD
hdeA
hdeB
yhiD
phage
TP7
-0.8
-0.2
-1.2
-0.7
-0.0
carbon source
Sodium-DL-Lactate
-0.1
-0.2
-1.8
-0.1
-0.0
phage
Phi92
+0.2
-0.8
-0.9
-0.3
-0.1
no phage control
Control_ECOR38
-0.0
-0.2
-1.5
-0.2
+0.1
carbon source
Sodium-DL-Lactate
-0.2
+0.2
-0.8
-0.2
-0.1
phage
Bas55
+0.4
-0.5
-1.1
+0.4
-0.1
carbon source
Casamino-acids
+0.2
-0.2
-0.6
-0.2
-0.0
phage
Bas38
+0.3
-0.2
-0.9
+0.0
+0.2
phage
Phi92
+0.2
-0.0
-0.9
+0.0
+0.3
phage
Bas38
+0.3
-0.2
-0.2
-0.2
+0.0
phage
RB23
+0.3
-0.4
+0.1
-0.2
+0.0
carbon source
D-Glucose
-0.2
-0.1
-0.1
+0.3
+0.1
phage
K20
+0.1
-0.2
+0.4
-0.3
+0.3
phage
Bas51
-0.2
+0.3
+0.4
-0.2
+0.0
phage
RB23
+0.1
+0.1
+0.3
-0.2
+0.0
phage
Bas39
-0.0
+0.0
+0.2
+0.1
+0.1
phage
Bas48
+0.3
-0.3
+0.4
+0.3
-0.1
phage
TP7
+0.3
-0.5
+1.0
-0.5
+0.2
carbon source
L-Arabinose
+0.3
+0.2
-0.1
-0.0
+0.1
carbon source
Casamino-acids
+0.4
-0.3
+0.6
-0.2
+0.1
phage
K20
+0.3
-0.2
+1.1
-0.5
-0.1
phage
Bas39
+0.1
+0.1
+0.6
-0.0
-0.1
phage
Bas48
+0.7
-0.4
+0.4
+0.2
+0.1
carbon source
L-Arabinose
+0.0
+0.1
+1.1
-0.0
+0.0
no phage control
Control_ECOR38
+0.1
+0.6
+1.0
-0.4
-0.0
phage
Bas19
-0.1
-0.3
+1.8
-0.1
+0.0
phage
RB68
-0.4
-0.4
+2.5
-0.0
+0.2
phage
Bas19
-0.3
+0.0
+2.5
-0.3
+0.1
phage
Bas55
+0.0
-0.1
+2.7
-0.0
-0.0
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