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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
yhjC and yhjB are separated by 446 nucleotides
yhjB and treF are separated by 50 nucleotides
treF and ccp are separated by 404 nucleotides
ccp and gadB are separated by 210 nucleotides
HEPCGN_15135: yhjC - Uncharacterized HTH-type transcriptional regulator YhjC, at 1,788,411 to 1,789,382
yhjC
HEPCGN_15140: yhjB - Putative HTH-type transcriptional regulator YhjB, at 1,789,829 to 1,790,431
yhjB
HEPCGN_15145: treF - Cytoplasmic trehalase, at 1,790,482 to 1,792,131
treF
HEPCGN_15150: ccp - cytochrome c peroxidase, at 1,792,536 to 1,793,933
ccp
HEPCGN_15155: gadB - glutamate decarboxylase, at 1,794,144 to 1,795,544
gadB
Group
Condition
HEPCGN
_15135
HEPCGN
_15140
HEPCGN
_15145
HEPCGN
_15150
HEPCGN
_15155
yhjC
yhjB
treF
ccp
gadB
phage
Phi92
-0.3
-0.3
-0.2
-0.2
+0.2
carbon source
Casamino-acids
-0.1
-0.0
+0.1
-0.1
-0.5
phage
Bas39
+0.1
-0.2
-0.2
+0.0
-0.3
carbon source
L-Arabinose
-0.1
-0.3
-0.1
-0.1
-0.0
phage
Bas19
-0.1
-0.1
-0.1
-0.1
-0.1
phage
Bas19
-0.1
-0.0
-0.0
-0.0
-0.3
phage
TP7
-0.4
+0.2
-0.0
+0.1
-0.3
phage
Bas38
+0.0
-0.2
+0.0
+0.0
-0.3
phage
RB23
+0.1
+0.0
-0.0
+0.1
-0.5
carbon source
Sodium-DL-Lactate
-0.1
+0.1
+0.2
+0.1
-0.5
carbon source
D-Glucose
+0.1
+0.1
-0.0
-0.0
-0.3
phage
Bas51
-0.1
+0.3
-0.1
+0.1
-0.4
phage
Phi92
-0.0
+0.2
-0.1
+0.1
-0.4
phage
RB23
+0.1
+0.0
+0.1
-0.1
-0.3
phage
Bas48
+0.3
-0.3
-0.0
+0.2
-0.4
phage
TP7
+0.3
+0.1
-0.2
+0.2
-0.6
phage
K20
+0.2
-0.1
+0.0
+0.1
-0.4
phage
RB68
-0.2
+0.2
+0.1
+0.1
-0.3
phage
Bas39
+0.0
-0.2
-0.0
-0.1
+0.2
carbon source
Casamino-acids
+0.1
-0.1
+0.2
-0.2
+0.0
no phage control
Control_ECOR38
-0.1
-0.0
-0.0
-0.1
+0.3
phage
Bas38
+0.2
-0.0
-0.1
+0.1
-0.1
phage
Bas55
+0.0
+0.1
+0.1
-0.0
-0.0
phage
K20
+0.0
+0.0
-0.1
+0.1
+0.2
phage
Bas48
+0.3
+0.3
+0.0
-0.1
-0.2
phage
Bas55
+0.1
+0.5
-0.1
+0.2
-0.4
carbon source
Sodium-DL-Lactate
+0.3
+0.2
+0.0
+0.0
+0.1
no phage control
Control_ECOR38
+0.3
+0.1
+0.1
+0.1
+0.0
carbon source
L-Arabinose
+0.1
-0.0
+0.1
+0.3
+0.2
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