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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
yhjD and yhjC are separated by 48 nucleotides
yhjC and yhjB are separated by 446 nucleotides
yhjB and treF are separated by 50 nucleotides
treF and ccp are separated by 404 nucleotides
HEPCGN_15130: yhjD - inner membrane protein YhjD, at 1,787,349 to 1,788,362
yhjD
HEPCGN_15135: yhjC - Uncharacterized HTH-type transcriptional regulator YhjC, at 1,788,411 to 1,789,382
yhjC
HEPCGN_15140: yhjB - Putative HTH-type transcriptional regulator YhjB, at 1,789,829 to 1,790,431
yhjB
HEPCGN_15145: treF - Cytoplasmic trehalase, at 1,790,482 to 1,792,131
treF
HEPCGN_15150: ccp - cytochrome c peroxidase, at 1,792,536 to 1,793,933
ccp
Group
Condition
HEPCGN
_15130
HEPCGN
_15135
HEPCGN
_15140
HEPCGN
_15145
HEPCGN
_15150
yhjD
yhjC
yhjB
treF
ccp
phage
Phi92
-0.3
-0.3
-0.3
-0.2
-0.2
phage
TP7
-0.9
-0.4
+0.2
-0.0
+0.1
phage
Bas19
-0.2
-0.1
-0.1
-0.1
-0.1
carbon source
L-Arabinose
-0.0
-0.1
-0.3
-0.1
-0.1
carbon source
Casamino-acids
-0.2
-0.1
-0.0
+0.1
-0.1
phage
Bas19
-0.1
-0.1
-0.0
-0.0
-0.0
phage
Bas39
-0.0
+0.1
-0.2
-0.2
+0.0
phage
Bas39
+0.0
+0.0
-0.2
-0.0
-0.1
no phage control
Control_ECOR38
+0.1
-0.1
-0.0
-0.0
-0.1
phage
TP7
-0.6
+0.3
+0.1
-0.2
+0.2
phage
RB23
-0.3
+0.1
+0.0
+0.1
-0.1
phage
K20
-0.2
+0.0
+0.0
-0.1
+0.1
carbon source
Casamino-acids
-0.1
+0.1
-0.1
+0.2
-0.2
phage
RB23
-0.3
+0.1
+0.0
-0.0
+0.1
carbon source
D-Glucose
-0.1
+0.1
+0.1
-0.0
-0.0
phage
Bas38
+0.2
+0.0
-0.2
+0.0
+0.0
phage
Bas55
-0.2
+0.0
+0.1
+0.1
-0.0
phage
RB68
-0.1
-0.2
+0.2
+0.1
+0.1
phage
Bas48
-0.1
+0.3
-0.3
-0.0
+0.2
phage
Phi92
-0.0
-0.0
+0.2
-0.1
+0.1
phage
Bas51
+0.1
-0.1
+0.3
-0.1
+0.1
phage
Bas48
-0.2
+0.3
+0.3
+0.0
-0.1
carbon source
Sodium-DL-Lactate
+0.1
-0.1
+0.1
+0.2
+0.1
phage
K20
+0.2
+0.2
-0.1
+0.0
+0.1
carbon source
Sodium-DL-Lactate
-0.1
+0.3
+0.2
+0.0
+0.0
phage
Bas38
+0.3
+0.2
-0.0
-0.1
+0.1
carbon source
L-Arabinose
+0.1
+0.1
-0.0
+0.1
+0.3
no phage control
Control_ECOR38
+0.2
+0.3
+0.1
+0.1
+0.1
phage
Bas55
+0.1
+0.1
+0.5
-0.1
+0.2
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