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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
kdgK and pdeH are separated by 231 nucleotides
pdeH and yhjG are separated by 69 nucleotides
yhjG and yhjE are separated by 178 nucleotides
yhjE and yhjD are separated by 391 nucleotides
HEPCGN_15110: kdgK - 2-dehydro-3-deoxygluconokinase, at 1,781,398 to 1,782,327
kdgK
HEPCGN_15115: pdeH - cyclic-guanylate-specific phosphodiesterase, at 1,782,559 to 1,783,326
pdeH
HEPCGN_15120: yhjG - AsmA family protein YhjG, at 1,783,396 to 1,785,456
yhjG
HEPCGN_15125: yhjE - Inner membrane metabolite transport protein YhjE, at 1,785,635 to 1,786,957
yhjE
HEPCGN_15130: yhjD - inner membrane protein YhjD, at 1,787,349 to 1,788,362
yhjD
Group
Condition
HEPCGN
_15110
HEPCGN
_15115
HEPCGN
_15120
HEPCGN
_15125
HEPCGN
_15130
kdgK
pdeH
yhjG
yhjE
yhjD
phage
TP7
-0.1
-0.2
-0.2
-0.1
-0.6
phage
TP7
+0.1
+0.0
+0.1
-0.1
-0.9
phage
RB23
-0.1
-0.2
+0.0
+0.1
-0.3
phage
RB23
-0.0
+0.1
-0.1
-0.1
-0.3
phage
Bas19
+0.1
-0.1
-0.0
-0.0
-0.2
phage
Bas55
+0.2
-0.5
+0.1
+0.1
-0.2
phage
K20
-0.0
-0.1
+0.1
+0.1
-0.2
phage
Phi92
-0.0
-0.1
+0.1
-0.1
-0.0
phage
Bas48
-0.1
-0.3
+0.2
+0.2
-0.2
phage
Bas55
-0.0
-0.4
+0.1
+0.0
+0.1
phage
Phi92
+0.0
-0.1
+0.4
-0.1
-0.3
phage
Bas48
-0.0
-0.2
-0.0
+0.2
-0.1
carbon source
Casamino-acids
-0.0
-0.0
+0.1
+0.1
-0.2
phage
Bas39
-0.0
+0.1
-0.1
-0.1
+0.0
phage
Bas51
+0.0
-0.0
-0.2
-0.0
+0.1
no phage control
Control_ECOR38
-0.0
-0.2
+0.1
-0.0
+0.2
no phage control
Control_ECOR38
-0.0
-0.1
-0.1
+0.1
+0.1
carbon source
D-Glucose
+0.0
+0.1
-0.1
+0.1
-0.1
carbon source
L-Arabinose
-0.0
-0.1
+0.0
+0.2
-0.0
phage
Bas19
+0.1
+0.1
-0.0
+0.1
-0.1
phage
Bas39
+0.0
-0.0
+0.0
+0.1
-0.0
phage
Bas38
-0.1
+0.2
+0.0
-0.2
+0.2
phage
RB68
+0.1
-0.1
+0.1
+0.2
-0.1
phage
Bas38
+0.1
-0.2
+0.0
-0.0
+0.3
phage
K20
+0.2
-0.3
+0.1
+0.1
+0.2
carbon source
Sodium-DL-Lactate
+0.1
+0.0
+0.1
+0.1
-0.1
carbon source
Sodium-DL-Lactate
-0.0
+0.1
+0.0
+0.2
+0.1
carbon source
Casamino-acids
+0.1
+0.3
+0.1
+0.2
-0.1
carbon source
L-Arabinose
+0.2
+0.1
+0.0
+0.2
+0.1
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