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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
rfaJ and HEPCGN_14525 are separated by 78 nucleotides
HEPCGN_14525 and HEPCGN_14530 are separated by 45 nucleotides
HEPCGN_14530 and rfaC are separated by 69 nucleotides
rfaC and rfaF are separated by 3 nucleotides
HEPCGN_14520: rfaJ - UDP-galactose--(galactosyl) LPS alpha1,2-galactosyltransferase, at 1,656,991 to 1,658,019
rfaJ
HEPCGN_14525: HEPCGN_14525 - beta1,3-glucosyltransferase, at 1,658,098 to 1,659,081
_14525
HEPCGN_14530: HEPCGN_14530 - O-antigen ligase domain-containing protein, at 1,659,127 to 1,660,380
_14530
HEPCGN_14535: rfaC - lipopolysaccharide heptosyltransferase RfaC, at 1,660,450 to 1,661,421
rfaC
HEPCGN_14540: rfaF - ADP-heptose--LPS heptosyltransferase RfaF, at 1,661,425 to 1,662,471
rfaF
Group
Condition
HEPCGN
_14520
HEPCGN
_14525
HEPCGN
_14530
HEPCGN
_14535
HEPCGN
_14540
rfaJ
rfaC
rfaF
phage
Bas39
-1.5
-4.4
-4.4
N.D.
-1.8
phage
Bas39
-1.3
-2.8
-3.1
N.D.
-3.5
carbon source
L-Arabinose
-0.2
-2.4
-1.3
N.D.
-4.5
phage
RB23
-2.0
-2.6
-2.3
N.D.
-1.3
phage
Bas38
-0.1
-1.6
-3.4
N.D.
-2.4
phage
RB23
-1.9
-2.3
-2.4
N.D.
-0.5
carbon source
Casamino-acids
+0.1
-1.1
-0.7
N.D.
-4.8
carbon source
Casamino-acids
+0.1
-0.8
-1.0
N.D.
-3.9
phage
Bas38
-0.2
-1.2
-2.1
N.D.
-1.3
carbon source
L-Arabinose
+0.6
-0.6
-2.5
N.D.
-2.3
phage
Bas55
+0.1
-3.1
-0.6
N.D.
-1.1
no phage control
Control_ECOR38
-0.3
-0.4
-0.3
N.D.
-3.3
no phage control
Control_ECOR38
-0.2
-0.7
-0.9
N.D.
-2.3
phage
Bas55
+0.6
-3.3
-0.3
N.D.
-0.9
phage
Bas51
-0.1
-1.0
-0.8
N.D.
-1.7
phage
Bas48
+2.2
-3.5
-0.8
N.D.
-1.1
carbon source
Sodium-DL-Lactate
+0.7
-0.2
-0.3
N.D.
-3.3
carbon source
Sodium-DL-Lactate
+0.3
-0.2
-1.4
N.D.
-1.8
carbon source
D-Glucose
+0.4
-0.4
-0.3
N.D.
-2.6
phage
RB68
-0.9
-0.8
+0.6
N.D.
-1.1
phage
Bas19
-0.1
-0.2
-0.4
N.D.
-1.0
phage
K20
+0.1
-1.0
-0.6
N.D.
+0.3
phage
K20
+0.1
-0.3
+0.0
N.D.
-0.4
phage
Bas19
+0.6
+0.8
-2.0
N.D.
+0.6
phage
Bas48
+2.0
-3.5
+1.7
N.D.
+0.6
phage
TP7
+5.3
+5.4
+4.2
N.D.
+2.4
phage
Phi92
+5.0
+6.2
+6.4
N.D.
+2.4
phage
Phi92
+5.4
+5.9
+5.2
N.D.
+3.6
phage
TP7
+5.6
+6.0
+4.7
N.D.
+4.2
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