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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
yidH and HEPCGN_13855 overlap by 11 nucleotides
HEPCGN_13855 and HEPCGN_13860 overlap by 4 nucleotides
HEPCGN_13860 and emrD are separated by 7 nucleotides
emrD and tisB are separated by 279 nucleotides
HEPCGN_13850: yidH - Inner membrane protein YidH, at 1,520,308 to 1,520,655
yidH
HEPCGN_13855: HEPCGN_13855 - DUF202 domain-containing protein, at 1,520,645 to 1,521,007
_13855
HEPCGN_13860: HEPCGN_13860 - Anaerobic sulfatase-maturating enzyme, at 1,521,004 to 1,521,501
_13860
HEPCGN_13865: emrD - multidrug efflux MFS transporter EmrD, at 1,521,509 to 1,522,693
emrD
HEPCGN_13870: tisB - Small toxic protein TisB, at 1,522,973 to 1,523,062
tisB
Group
Condition
HEPCGN
_13850
HEPCGN
_13855
HEPCGN
_13860
HEPCGN
_13865
HEPCGN
_13870
yidH
emrD
tisB
carbon source
L-Arabinose
-1.2
-0.9
-0.0
-0.4
N.D.
carbon source
L-Arabinose
-0.8
-0.9
-0.3
-0.5
N.D.
carbon source
Sodium-DL-Lactate
-1.0
-0.8
-0.4
-0.1
N.D.
carbon source
Sodium-DL-Lactate
-1.3
-1.0
+0.0
-0.0
N.D.
carbon source
D-Glucose
-0.7
-0.7
-0.4
-0.1
N.D.
phage
TP7
-0.1
-0.3
-0.4
-0.2
N.D.
phage
RB23
-0.3
-0.2
-0.4
-0.1
N.D.
phage
Bas51
-0.3
-0.1
-0.1
-0.1
N.D.
phage
Phi92
-0.6
+0.1
-0.5
+0.4
N.D.
phage
TP7
-0.4
+0.2
-0.0
-0.1
N.D.
no phage control
Control_ECOR38
-0.1
+0.1
-0.2
-0.1
N.D.
phage
Bas48
-0.3
+0.3
-0.2
-0.0
N.D.
phage
Bas48
-0.2
-0.2
+0.3
-0.1
N.D.
no phage control
Control_ECOR38
-0.0
-0.1
-0.1
+0.1
N.D.
phage
Bas55
-0.1
-0.0
-0.1
+0.0
N.D.
phage
Bas19
-0.1
-0.3
+0.4
+0.0
N.D.
phage
Phi92
+0.0
-0.1
-0.2
+0.4
N.D.
phage
Bas39
+0.1
+0.1
-0.1
-0.0
N.D.
phage
Bas19
+0.1
+0.0
-0.0
-0.1
N.D.
phage
Bas38
+0.1
+0.1
-0.1
-0.0
N.D.
carbon source
Casamino-acids
+0.0
+0.1
-0.1
+0.1
N.D.
phage
RB68
-0.1
-0.1
+0.2
+0.1
N.D.
phage
K20
-0.0
+0.4
-0.3
+0.1
N.D.
phage
RB23
-0.1
+0.1
-0.2
+0.3
N.D.
phage
Bas39
+0.2
+0.0
-0.0
-0.0
N.D.
carbon source
Casamino-acids
+0.1
+0.1
+0.1
-0.0
N.D.
phage
K20
-0.3
+0.1
+0.1
+0.2
N.D.
phage
Bas38
+0.1
-0.3
+0.0
+0.4
N.D.
phage
Bas55
-0.1
+0.2
+0.2
+0.1
N.D.
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