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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
rbsD and kup are separated by 166 nucleotides
kup and HEPCGN_13470 are separated by 158 nucleotides
HEPCGN_13470 and ravA are separated by 173 nucleotides
ravA and viaA overlap by 7 nucleotides
HEPCGN_13460: rbsD - D-ribose pyranase, at 1,436,877 to 1,437,296
rbsD
HEPCGN_13465: kup - low affinity potassium transporter Kup, at 1,437,463 to 1,439,331
kup
HEPCGN_13470: HEPCGN_13470 - IS4-like element IS4 family transposase, at 1,439,490 to 1,440,818
_13470
HEPCGN_13475: ravA - ATPase RavA, at 1,440,992 to 1,442,488
ravA
HEPCGN_13480: viaA - ATPase RavA stimulator ViaA, at 1,442,482 to 1,443,933
viaA
Group
Condition
HEPCGN
_13460
HEPCGN
_13465
HEPCGN
_13470
HEPCGN
_13475
HEPCGN
_13480
rbsD
kup
ravA
viaA
phage
Bas55
+0.0
-0.2
N.D.
-0.3
-0.0
phage
Bas48
+0.1
+0.2
N.D.
-0.4
-0.4
phage
Phi92
-0.2
+0.1
N.D.
-0.2
-0.2
phage
RB68
-0.4
+0.1
N.D.
-0.1
-0.0
phage
Phi92
-0.3
+0.5
N.D.
-0.1
-0.3
phage
Bas39
-0.3
+0.0
N.D.
+0.1
-0.1
carbon source
Casamino-acids
-0.2
-0.1
N.D.
+0.1
-0.0
phage
Bas38
-0.0
-0.0
N.D.
-0.0
-0.0
carbon source
L-Arabinose
-0.3
-0.1
N.D.
+0.2
+0.1
no phage control
Control_ECOR38
+0.2
+0.0
N.D.
-0.2
-0.1
phage
Bas38
+0.1
-0.1
N.D.
-0.1
+0.1
carbon source
Sodium-DL-Lactate
-0.0
-0.1
N.D.
-0.0
+0.2
phage
Bas19
+0.2
+0.0
N.D.
-0.1
-0.1
carbon source
Sodium-DL-Lactate
+0.1
-0.1
N.D.
+0.1
-0.1
phage
K20
+0.3
+0.1
N.D.
-0.1
-0.1
carbon source
Casamino-acids
+0.2
-0.1
N.D.
+0.2
-0.1
phage
Bas51
+0.1
-0.1
N.D.
+0.1
+0.1
phage
RB23
+0.1
+0.1
N.D.
+0.1
+0.0
phage
Bas55
+0.2
+0.0
N.D.
-0.0
+0.1
no phage control
Control_ECOR38
+0.1
-0.0
N.D.
+0.0
+0.2
phage
Bas19
+0.3
+0.0
N.D.
-0.1
-0.0
phage
Bas48
+0.2
+0.1
N.D.
-0.2
+0.1
phage
TP7
-0.1
+0.2
N.D.
+0.1
+0.1
carbon source
D-Glucose
+0.0
-0.0
N.D.
+0.0
+0.3
phage
TP7
+0.2
+0.1
N.D.
-0.2
+0.3
phage
Bas39
+0.3
-0.0
N.D.
+0.1
+0.0
phage
K20
+0.3
+0.0
N.D.
-0.1
+0.2
carbon source
L-Arabinose
+0.3
-0.1
N.D.
+0.2
+0.2
phage
RB23
+0.3
+0.2
N.D.
+0.1
+0.0
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