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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
fadB and fadA are separated by 9 nucleotides
fadA and fre are separated by 190 nucleotides
fre and ubiD are separated by 45 nucleotides
ubiD and rfaH are separated by 166 nucleotides
HEPCGN_12875: fadB - fatty acid oxidation complex subunit alpha FadB, at 1,324,467 to 1,326,656
fadB
HEPCGN_12880: fadA - acetyl-CoA C-acyltransferase FadA, at 1,326,666 to 1,327,829
fadA
HEPCGN_12885: fre - NAD(P)H-flavin reductase, at 1,328,020 to 1,328,721
fre
HEPCGN_12890: ubiD - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 1,328,767 to 1,330,260
ubiD
HEPCGN_12895: rfaH - transcription/translation regulatory transformer protein RfaH, at 1,330,427 to 1,330,915
rfaH
Group
Condition
HEPCGN
_12875
HEPCGN
_12880
HEPCGN
_12885
HEPCGN
_12890
HEPCGN
_12895
fadB
fadA
fre
ubiD
rfaH
phage
Bas19
-0.1
-0.0
-0.3
N.D.
-5.9
phage
RB23
-0.0
+0.0
+0.2
N.D.
-6.1
phage
RB23
-0.0
+0.3
-0.1
N.D.
-6.0
phage
Bas19
+0.0
+0.0
-0.3
N.D.
-5.1
phage
Bas39
+0.2
-0.0
-0.6
N.D.
-4.7
phage
Bas39
+0.2
-0.2
-0.4
N.D.
-3.3
phage
Bas51
-0.0
-0.1
-0.9
N.D.
+0.2
no phage control
Control_ECOR38
+0.0
-0.1
-0.7
N.D.
+0.2
phage
K20
-0.1
+0.1
-0.8
N.D.
+0.4
phage
RB68
-0.1
-0.2
-0.6
N.D.
+0.6
phage
Bas38
+0.0
-0.1
-0.3
N.D.
+0.1
no phage control
Control_ECOR38
+0.1
-0.1
-0.3
N.D.
+0.1
phage
K20
+0.1
+0.0
-0.5
N.D.
+0.3
carbon source
D-Glucose
+0.0
+0.2
-0.3
N.D.
+0.0
phage
Bas55
+0.0
-0.1
-0.4
N.D.
+0.4
carbon source
L-Arabinose
+0.1
-0.2
-0.5
N.D.
+0.4
carbon source
L-Arabinose
-0.0
+0.1
-0.3
N.D.
+0.3
carbon source
Casamino-acids
-0.1
+0.0
-0.9
N.D.
+1.1
phage
Bas38
+0.0
-0.0
-0.1
N.D.
+0.3
carbon source
Sodium-DL-Lactate
+0.1
+0.0
-0.1
N.D.
+0.4
carbon source
Sodium-DL-Lactate
-0.1
+0.1
-0.1
N.D.
+0.6
phage
Bas55
+0.1
+0.0
-0.3
N.D.
+0.8
phage
Bas48
+0.0
+0.3
-0.9
N.D.
+1.8
carbon source
Casamino-acids
+0.1
+0.4
-0.8
N.D.
+2.1
phage
Bas48
-0.0
+0.2
-0.1
N.D.
+2.1
phage
TP7
-0.2
-0.0
+0.7
N.D.
+5.8
phage
TP7
-0.2
+0.2
+0.4
N.D.
+6.2
phage
Phi92
-0.1
-0.1
+1.5
N.D.
+6.6
phage
Phi92
-0.2
+0.2
+1.4
N.D.
+6.7
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