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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
fabY and dtd are separated by 44 nucleotides
dtd and yihY overlap by 4 nucleotides
yihY and yihX overlap by 7 nucleotides
yihX and csqR are separated by 98 nucleotides
HEPCGN_12630: fabY - fatty acid biosynthesis protein FabY, at 1,276,075 to 1,277,016
fabY
HEPCGN_12635: dtd - D-aminoacyl-tRNA deacylase, at 1,277,061 to 1,277,498
dtd
HEPCGN_12640: yihY - virulence factor BrkB family protein, at 1,277,495 to 1,278,367
yihY
HEPCGN_12645: yihX - glucose-1-phosphatase, at 1,278,361 to 1,278,960
yihX
HEPCGN_12650: csqR - HTH-type transcriptional repressor CsqR, at 1,279,059 to 1,279,844
csqR
Group
Condition
HEPCGN
_12630
HEPCGN
_12635
HEPCGN
_12640
HEPCGN
_12645
HEPCGN
_12650
fabY
dtd
yihY
yihX
csqR
phage
TP7
-0.3
+0.2
-0.4
-0.5
-0.5
phage
TP7
+0.0
+0.3
-0.3
-0.4
-0.5
carbon source
L-Arabinose
-0.4
-0.0
+0.0
-0.0
-0.3
carbon source
Casamino-acids
+0.1
+0.0
+0.0
-0.1
-0.7
phage
Bas19
-0.0
+0.1
-0.2
-0.3
-0.2
phage
RB23
-0.1
-0.1
+0.0
-0.1
-0.3
phage
K20
-0.0
+0.2
+0.2
-0.1
-0.8
phage
Bas19
-0.1
+0.2
-0.1
-0.1
-0.4
phage
Bas48
+0.4
+0.3
-0.1
+0.1
-1.2
phage
RB23
+0.1
+0.0
+0.1
-0.2
-0.5
phage
Bas39
+0.2
-0.4
+0.1
+0.1
-0.4
phage
Bas48
+0.1
+0.1
-0.1
-0.1
-0.4
carbon source
Casamino-acids
+0.1
+0.5
+0.1
+0.1
-1.0
phage
RB68
-0.1
+0.2
-0.0
+0.2
-0.5
no phage control
Control_ECOR38
-0.3
+0.0
+0.3
+0.2
-0.3
phage
Bas55
-0.0
-0.1
+0.1
+0.1
-0.3
phage
K20
+0.1
+0.0
+0.2
+0.0
-0.4
phage
Bas38
+0.2
-0.1
+0.1
-0.1
-0.1
phage
Bas38
+0.4
-0.0
-0.1
-0.1
-0.2
phage
Bas39
+0.0
-0.0
+0.4
+0.0
-0.4
carbon source
D-Glucose
-0.3
+0.0
+0.2
-0.0
+0.1
carbon source
L-Arabinose
+0.0
-0.6
+0.3
+0.1
+0.2
phage
Bas51
+0.2
-0.3
+0.3
+0.1
-0.1
no phage control
Control_ECOR38
+0.2
-0.1
+0.2
+0.1
-0.1
phage
Phi92
-0.2
+0.7
+0.2
-0.1
-0.2
phage
Bas55
+0.0
+0.4
+0.2
+0.0
-0.3
carbon source
Sodium-DL-Lactate
+0.2
+0.0
+0.2
-0.0
-0.0
carbon source
Sodium-DL-Lactate
+0.0
+0.5
+0.3
-0.1
-0.1
phage
Phi92
-0.0
+0.3
+0.0
+0.0
+0.2
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