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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
frvB and frvX overlap by 11 nucleotides
frvX and frvR overlap by 1 nucleotides
frvR and yiiG are separated by 49 nucleotides
yiiG and fdhD are separated by 152 nucleotides
HEPCGN_12565: frvB - PTS fructose-like transporter subunit IIBC, at 1,260,073 to 1,261,524
frvB
HEPCGN_12570: frvX - aminopeptidase, at 1,261,514 to 1,262,584
frvX
HEPCGN_12575: frvR - putative frv operon regulatory protein, at 1,262,584 to 1,264,332
frvR
HEPCGN_12580: yiiG - Uncharacterized protein YiiG, at 1,264,382 to 1,265,437
yiiG
HEPCGN_12585: fdhD - formate dehydrogenase accessory sulfurtransferase FdhD, at 1,265,590 to 1,266,423
fdhD
Group
Condition
HEPCGN
_12565
HEPCGN
_12570
HEPCGN
_12575
HEPCGN
_12580
HEPCGN
_12585
frvB
frvX
frvR
yiiG
fdhD
phage
Phi92
-0.1
-0.2
+0.2
-0.4
-0.2
phage
Phi92
+0.1
-0.4
+0.3
-0.5
-0.2
phage
K20
+0.1
-0.2
+0.1
-0.2
-0.2
phage
RB68
+0.1
+0.2
-0.1
-0.4
-0.2
phage
K20
+0.0
+0.1
-0.0
+0.0
-0.4
phage
Bas48
-0.0
-0.1
+0.1
-0.1
-0.1
phage
RB23
+0.0
-0.0
+0.0
+0.1
-0.4
phage
Bas19
-0.0
+0.0
+0.2
-0.1
-0.4
phage
TP7
-0.1
+0.1
-0.2
-0.3
+0.3
carbon source
D-Glucose
+0.2
-0.0
-0.1
+0.1
-0.2
phage
RB23
-0.1
+0.0
-0.1
+0.0
+0.1
no phage control
Control_ECOR38
-0.1
+0.2
-0.1
+0.3
-0.2
phage
Bas19
+0.1
+0.0
+0.1
-0.3
+0.2
phage
Bas39
+0.1
-0.1
-0.1
+0.1
-0.0
phage
Bas38
+0.0
-0.0
+0.0
-0.0
+0.1
carbon source
Casamino-acids
+0.0
+0.1
-0.1
+0.1
-0.1
phage
Bas55
-0.0
+0.1
+0.1
-0.1
+0.0
no phage control
Control_ECOR38
+0.0
+0.1
-0.0
+0.2
-0.1
phage
TP7
+0.2
+0.3
-0.0
-0.3
+0.0
phage
Bas55
-0.0
+0.0
-0.0
+0.2
-0.1
carbon source
Casamino-acids
+0.2
-0.1
-0.0
-0.1
+0.2
phage
Bas38
-0.1
-0.2
+0.1
+0.3
+0.2
phage
Bas51
-0.0
+0.0
+0.1
+0.1
+0.1
carbon source
L-Arabinose
+0.1
+0.1
-0.3
+0.4
+0.1
carbon source
L-Arabinose
+0.2
-0.2
+0.0
+0.2
+0.2
carbon source
Sodium-DL-Lactate
+0.1
+0.1
+0.3
+0.1
+0.0
phage
Bas48
-0.1
+0.3
+0.1
+0.1
+0.2
carbon source
Sodium-DL-Lactate
+0.1
-0.1
+0.1
+0.4
+0.2
phage
Bas39
-0.0
+0.2
+0.2
+0.3
+0.4
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