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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
cdh and sbp are separated by 106 nucleotides
sbp and pfkA are separated by 319 nucleotides
pfkA and fieF are separated by 180 nucleotides
fieF and cpxP are separated by 148 nucleotides
HEPCGN_12460: cdh - CDP-diacylglycerol diphosphatase, at 1,240,521 to 1,241,276
cdh
HEPCGN_12465: sbp - sulfate/thiosulfate ABC transporter substrate-binding protein Sbp, at 1,241,383 to 1,242,372
sbp
HEPCGN_12475: pfkA - 6-phosphofructokinase, at 1,242,692 to 1,243,654
pfkA
HEPCGN_12480: fieF - CDF family cation-efflux transporter FieF, at 1,243,835 to 1,244,737
fieF
HEPCGN_12485: cpxP - cell-envelope stress modulator CpxP, at 1,244,886 to 1,245,386
cpxP
Group
Condition
HEPCGN
_12460
HEPCGN
_12465
HEPCGN
_12475
HEPCGN
_12480
HEPCGN
_12485
cdh
sbp
pfkA
fieF
cpxP
carbon source
D-Glucose
-0.2
+0.0
-4.0
+0.0
-0.6
phage
TP7
-1.8
-0.5
-1.2
+0.1
+1.0
phage
RB23
-0.6
-0.1
-1.9
-0.1
+0.4
phage
TP7
-1.4
-0.2
-1.2
+0.1
+0.5
carbon source
L-Arabinose
+0.1
+0.3
-2.6
+0.2
-0.2
phage
RB68
-0.5
-0.2
-1.4
+0.0
-0.0
phage
K20
-0.6
-0.2
-1.0
+0.1
-0.2
phage
Bas19
-0.4
-0.4
-1.5
+0.0
+0.3
phage
Bas19
-0.5
-0.2
-0.9
+0.1
+0.0
phage
RB23
-0.0
-0.1
-1.4
-0.2
+0.3
no phage control
Control_ECOR38
-0.1
-0.1
-1.3
-0.1
+0.2
carbon source
L-Arabinose
+0.1
+0.4
-1.9
+0.2
-0.2
phage
Bas55
+0.1
-0.4
-1.1
+0.1
-0.2
phage
Bas51
-0.3
+0.1
-1.1
+0.1
-0.1
phage
K20
+0.2
+0.1
-1.7
-0.1
+0.2
no phage control
Control_ECOR38
-0.1
-0.5
-0.6
+0.0
-0.1
phage
Bas39
-0.0
+0.2
-0.8
+0.1
-0.1
phage
Bas48
-0.0
-0.2
-0.6
-0.0
+0.2
phage
Bas39
-0.1
-0.1
-0.7
+0.1
+0.3
phage
Bas38
-0.2
-0.2
-0.2
+0.1
+0.2
phage
Bas48
+0.1
-0.2
-0.7
+0.1
+0.4
carbon source
Sodium-DL-Lactate
-0.1
+0.1
-0.1
+0.0
-0.2
phage
Bas55
+0.4
-0.0
-0.8
+0.1
+0.1
phage
Bas38
-0.2
-0.0
-0.2
+0.1
+0.2
carbon source
Casamino-acids
+0.1
+0.0
-0.2
+0.1
-0.0
carbon source
Casamino-acids
+0.3
-0.0
-0.0
+0.1
-0.2
carbon source
Sodium-DL-Lactate
+0.3
-0.1
+0.4
+0.1
-0.4
phage
Phi92
+2.7
-0.3
+0.5
-0.2
-0.7
phage
Phi92
+2.5
-0.1
+0.7
+0.2
-0.6
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