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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
pgtP and tnpA are separated by 291 nucleotides
tnpA and tnpB overlap by 1 nucleotides
tnpB and tnp-IS66 are separated by 19 nucleotides
tnp-IS66 and HEPCGN_10780 are separated by 302 nucleotides
HEPCGN_10760: pgtP - phosphoglycerate transporter PgtP, at 896,625 to 897,989
pgtP
HEPCGN_10765: tnpA - IS66-like element accessory protein TnpA, at 898,281 to 898,931
tnpA
HEPCGN_10770: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 898,931 to 899,278
tnpB
HEPCGN_10775: tnp-IS66 - IS66 family transposase, at 899,298 to 900,869
tnp-IS66
HEPCGN_10780: HEPCGN_10780 - DUF4198 domain-containing protein, at 901,172 to 901,963
_10780
Group
Condition
HEPCGN
_10760
HEPCGN
_10765
HEPCGN
_10770
HEPCGN
_10775
HEPCGN
_10780
pgtP
tnpA
tnpB
tnp-IS66
carbon source
L-Arabinose
+0.1
-0.2
-0.6
+0.0
-0.2
phage
TP7
-0.0
-0.2
-0.5
-0.1
+0.0
phage
K20
+0.0
-0.1
-0.5
-0.2
-0.0
no phage control
Control_ECOR38
+0.1
-0.1
-0.7
+0.0
-0.0
phage
RB68
-0.1
-0.1
-0.4
-0.2
+0.1
carbon source
D-Glucose
+0.1
-0.3
-0.4
-0.1
+0.1
phage
Bas38
+0.0
-0.2
-0.3
-0.1
+0.0
phage
Bas51
-0.0
-0.2
-0.3
-0.1
+0.0
carbon source
Casamino-acids
+0.1
+0.0
-0.6
+0.1
-0.1
phage
K20
+0.1
-0.0
-0.4
+0.1
-0.1
phage
Bas19
-0.2
-0.2
+0.1
+0.1
-0.2
phage
TP7
-0.3
-0.3
+0.2
-0.0
+0.1
phage
Bas55
+0.1
-0.2
-0.3
+0.2
-0.1
phage
Bas38
+0.0
+0.0
-0.4
-0.0
+0.0
phage
Phi92
-0.1
-0.3
+0.0
+0.2
-0.1
carbon source
Casamino-acids
+0.2
-0.0
-0.0
-0.1
-0.2
phage
Phi92
+0.1
+0.0
-0.4
+0.1
+0.1
phage
Bas55
+0.1
-0.0
-0.1
-0.0
+0.1
phage
RB23
-0.1
-0.1
+0.0
+0.2
+0.1
carbon source
L-Arabinose
+0.2
-0.1
+0.1
+0.0
-0.2
carbon source
Sodium-DL-Lactate
+0.1
+0.1
+0.2
-0.2
-0.0
phage
RB23
+0.1
+0.1
+0.1
+0.0
-0.1
carbon source
Sodium-DL-Lactate
+0.0
-0.1
+0.2
+0.3
-0.1
phage
Bas48
-0.1
+0.1
+0.4
-0.0
-0.0
phage
Bas39
+0.2
-0.2
+0.2
-0.1
+0.2
phage
Bas39
+0.1
-0.0
+0.2
+0.1
+0.1
no phage control
Control_ECOR38
+0.0
-0.2
+0.2
+0.1
+0.2
phage
Bas48
+0.0
-0.0
+0.5
-0.1
+0.2
phage
Bas19
+0.2
+0.0
+0.3
+0.0
+0.1
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