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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
HEPCGN_10430 and yjfJ are separated by 49 nucleotides
yjfJ and yjfI are separated by 18 nucleotides
yjfI and rlmB are separated by 126 nucleotides
rlmB and rnr are separated by 180 nucleotides
HEPCGN_10430: HEPCGN_10430 - DUF2491 domain-containing protein, at 828,099 to 828,758
_10430
HEPCGN_10435: yjfJ - Uncharacterized protein YjfJ, at 828,808 to 829,506
yjfJ
HEPCGN_10440: yjfI - Uncharacterized protein YjfI, at 829,525 to 829,926
yjfI
HEPCGN_10445: rlmB - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 830,053 to 830,784
rlmB
HEPCGN_10450: rnr - ribonuclease R, at 830,965 to 833,406
rnr
Group
Condition
HEPCGN
_10430
HEPCGN
_10435
HEPCGN
_10440
HEPCGN
_10445
HEPCGN
_10450
yjfJ
yjfI
rlmB
rnr
carbon source
Sodium-DL-Lactate
+0.0
-1.2
-0.3
+0.3
-0.3
carbon source
Casamino-acids
-0.1
-0.6
-0.1
-0.1
-0.1
phage
K20
+0.0
-1.0
-0.0
+0.1
-0.2
phage
Bas48
-0.1
-0.3
-0.0
-0.7
+0.3
carbon source
L-Arabinose
-0.0
-0.2
-0.4
-0.1
-0.1
phage
Bas51
-0.2
-0.4
+0.2
+0.1
-0.3
carbon source
Casamino-acids
+0.1
+0.0
-0.5
+0.3
-0.4
phage
Bas19
+0.0
-0.6
-0.1
+0.1
+0.1
phage
K20
+0.2
-0.2
+0.1
-0.3
-0.2
phage
Bas38
-0.1
-0.1
+0.3
-0.2
-0.2
phage
RB68
+0.2
-0.3
-0.0
-0.0
-0.2
phage
Bas19
-0.0
-0.3
+0.1
-0.2
+0.1
no phage control
Control_ECOR38
-0.2
+0.5
-0.1
-0.2
-0.2
carbon source
L-Arabinose
+0.2
-0.1
-0.2
+0.0
-0.1
phage
Bas55
+0.2
-0.2
-0.1
+0.1
-0.1
phage
Bas38
-0.1
+0.5
-0.1
-0.3
-0.2
phage
Bas48
-0.1
-0.1
-0.1
+0.1
+0.2
phage
RB23
+0.1
-0.5
-0.0
+0.2
+0.1
phage
RB23
+0.3
-0.2
-0.3
-0.0
+0.3
phage
Bas39
-0.0
+0.0
+0.1
+0.2
-0.2
phage
Bas39
-0.1
+0.8
-0.3
-0.2
-0.0
carbon source
D-Glucose
-0.1
-0.1
+0.1
+0.3
-0.1
phage
TP7
-0.3
-0.6
+0.5
-0.5
+1.1
phage
Bas55
-0.0
+0.4
+0.1
-0.0
-0.2
no phage control
Control_ECOR38
-0.2
+0.4
+0.4
-0.0
-0.1
carbon source
Sodium-DL-Lactate
+0.2
+0.1
+0.6
+0.0
-0.3
phage
TP7
-0.3
-0.7
+0.3
+0.2
+1.4
phage
Phi92
+0.1
-0.8
+0.2
+0.8
+1.0
phage
Phi92
+0.2
-0.5
+0.3
+1.0
+0.9
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